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2024

: Ackerschott, J., Barman, R. K., Gonçalves, D., Heimel, T., & Plehn, T. (2024). Returning CP-observables to the frames they belong. SciPost Physics, 17(1). doi:10.21468/scipostphys.17.1.001
: Ahadi, P., Balasundaram, B., Borrero, J. S., & Chen, C. (2024). Development and optimization of expected cross value for mate selection problems. Heredity. doi:10.1038/s41437-024-00697-y
: Alghamdi, K. I., Moghimi, P., Bach, C. K., & Spitler, J. D. (2024). Model development and validation of a vapor-compression system integrating water-based thermal energy storage using a three-ﬂuid heat exchanger (tricoil™). Energy and Buildings, 114587. doi:10.1016/j.enbuild.2024.114587
: Baber, N., Nalagan, J., & Prasad, C. (2024). Upstream sound generation mechanisms in supersonic impinging jets. Bulletin of the American Physical Society.
: Babu, K. S., Barman, R. K., Gonçalves, D., & Ismail, A. (2024). Probing lepton number violation and majorana nature of neutrinos at the lhc. Journal of High Energy Physics, 2024(6). doi:10.1007/jhep06(2024)132
: Braga, R. E., Najar, F. Z., Murphy, C. L., & Patrauchan, M. A. (2024). Carbonic anhydrases in bacterial pathogens. In The enzymes. Elsevier. doi:10.1016/bs.enz.2024.05.007
: Cevallos Navarrete, F. G. (2024). Host-pathogen interaction between ophiosphaerella korrae and symptomatic and asymptomatic hosts plants (Doctoral dissertation, Oklahoma State University). HDL: 20.500.14446/344890
: Crutchﬁeld, B. (2024). Mechanical behavior of Ni_xCr alloys with Ti₃SiC₂ nanoparticle inclusions using molecular dynamics (Master’s thesis, Arkansas State University). Retrieved from https://www.proquest.com/docview/3102666144
: Das, S. K. & Shah, J. K. (2024). Exploring binding aﬃnity of 1-n-alkyl-3-methylimidazolium chloride with iron porphyrin and electron uptake ability of the ionic liquid-FeP complex. Journal of Ionic Liquids, 100078. doi:10.1016/j.jil.2024.100078
: de Rojas, J., Atkinson, D., & Adeyeye, A. O. (2024). Tailoring magnon modes by extending square, kagome, and trigonal spin ice lattices vertically via interlayer coupling of trilayer nanomagnets. Journal of Physics: Condensed Matter, 36(41), 415805. doi:10.1088/1361-648x/ad5d3f. PMID: 38942012
: Dong, Z., Gonçalves, D., Kong, K., & Navarro, A. (2024). Entanglement and bell inequalities with boosted tt. Physical Review D, 109(11). doi:10.1103/physrevd.109.115023
: Duha, A. & Bilitewski, T. (2024a). Two-mode squeezing and entanglement dynamics for power-law interactions in two-dimensional bi-layer spin ½ system. Bulletin of the American Physical Society.
: Duha, A. & Bilitewski, T. (2024b). Two-mode squeezing in ﬂoquet-engineered power-law interacting spin models. Physical Review A, 109(6). doi:10.1103/physreva.109.l061304
: Duha, A. & Borunda, M. F. (2024). Eﬀect of uncorrelated on-site scalar potential and mass disorder on transport of two-dimensional dirac fermions. Physical Review B, 110(9). doi:10.1103/physrevb.110.094205
: Duha, A., Stoltz, K., DeSilva, C. R., & Borunda, M. F. (2024). Investigating the catalytic properties of co-doped ZnO for ﬁscher-tropsch synthesis. Bulletin of the American Physical Society.
: Gautam, S. & Prasad, C. (2024). Compressibility-induced variation in drag and lift coeﬃcients of NACA0012 airfoil. Bulletin of the American Physical Society.
: Gunasekara, S., Tamil Selvan, M., Murphy, C. L., Shatnawi, S., Cowan, S., More, S., Ritchey, J., Miller, C. A., & Rudd, J. M. (2024). Characterization of neutrophil functional responses to SARS-CoV-2 infection in a translational feline model for COVID-19. International Journal of Molecular Sciences, 25(18), 10054. doi:10.3390/ijms251810054
: Hwang, J., Peng, Z., Najar, F. Z., Xu, C., Agnew, R. J., Xu, X., Yang, Z., & Ahsan, N. (2024). Urine proteome proﬁle of ﬁreﬁghters with exposure to emergency ﬁre-induced smoke: A pilot study to identify potential carcinogenic eﬀects. Science of The Total Environment, 927, 172273. doi:10.1016/j.scitotenv.2024.172273. PMID: 38583625
: Ingram, Z. J., Lander, C. W., Oliver, M. C., Altınçekiç, N. G., Huang, L., Shao, Y., & Noh, H. (2024). Hydrogen atom binding energy of structurally well-deﬁned cerium oxide nodes at the metal–organic framework–liquid interfaces. The Journal of Physical Chemistry C. doi:10.1021/acs.jpcc.4c02409
: Ishola, O. & Vilcáez, J. (2024). Augmenting x-ray micro-CT data with MICP data for high resolution pore-scale simulations a of ﬂow properties of carbonate rocks. Geoenergy Science and Engineering, 239, 212982. doi:10.1016/j.geoen.2024.212982
: KC, R. J., Wilson, T. C., Lucido, N. A., Alexander, A. S., Jacob, J. D., & Elbing, B. R. (2024). Laminar boundary layer over a serrated backward-facing step. Fluids, 9(6), 135. doi:10.3390/ﬂuids9060135
: Lawal, M. M., Roy, P., & McCullagh, M. (2024). Role of ATP hydrolysis and product release in the translocation mechanism of SARS-CoV-2 NSP13. The Journal of Physical Chemistry B, 128(2), 492–503. doi:10.1021/acs.jpcb.3c06714. PMID: 38175211
: Leicht, A. F., Mahdi, M. A., McNamara, K., Noori, H., & Zhao, W. (2024). Design, manufacturing, and experiments of additive manufactured stiﬀened thin-walled plates. In Aiaa scitech 2024 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2024-2077
: Mahdi, M. A., Crick, C., & Zhao, W. (2024). Lattice structure design using machine learning and homogenization approach. In Asme 2024 aerospace structures, structural dynamics, and materials conference. SSDM2024. American Society of Mechanical Engineers. doi:10.1115/ssdm2024-121612
: Meili, C. H., TagElDein, M. A., Jones, A. L., Moon, C. D., Andrews, C., Kirk, M. R., Janssen, P. H., J. Yeoman, C., Grace, S., Borgogna, J.-L. C., Foote, A. P., Nagy, Y. I., Kashef, M. T., Yassin, A. S., Elshahed, M. S., & Youssef, N. H. (2024). Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores. Applied and Environmental Microbiology. doi:10.1128/aem.01492-23. PMID: 38299813
: Oz, F. & Kara, K. (2024a). Controlling hypersonic boundary layer transition with localized cooling and metasurface treatments. Scientiﬁc Reports, 14(1). doi:10.1038/s41598-024-66867-4. PMID: 38987632
: Oz, F. & Kara, K. (2024b). Hypersonic boundary layer stabilization via fully resolved local metasurface structures. In Aiaa scitech 2024 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2024-1102
: Poudel, P., Alderman, P. D., Ochsner, T. E., & Lollato, R. P. (2024). A parsimonious bayesian crop growth model for water-limited winter wheat. Computers and Electronics in Agriculture, 217, 108618. doi:10.1016/j.compag.2024.108618
: Pratt, C. J., Meili, C. H., Jones, A. L., Jackson, D. K., England, E. E., Wang, Y., Hartson, S., Rogers, J., Elshahed, M. S., & Youssef, N. H. (2024). Anaerobic fungi in the tortoise alimentary tract illuminate early stages of host-fungal symbiosis and neocallimastigomycota evolution. Nature Communications, 15(1). doi:10.1038/s41467-024-47047-4
: Reichert, M. S., Luttbeg, B., & Hobson, E. A. (2024). Collective signalling is shaped by feedbacks between signaller variation, receiver perception and acoustic environment in a simulated communication network. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1905). doi:10.1098/rstb.2023.0186. PMID: 38768210
: Robbins, C. J., Sadler, J. M., Trolle, D., Nielsen, A., Wagner, N. D., & Scott, J. T. (2024). Does polymixis complicate prediction of high‐frequency dissolved oxygen in lakes and reservoirs? Limnology and Oceanography. doi:10.1002/lno.12650
: Robertson, E. P., La Sorte, F. A., Mays, J. D., Taillie, P. J., Robinson, O. J., Ansley, R. J., O’Connell, T. J., Davis, C. A., & Loss, S. R. (2024). Decoupling of bird migration from the changing phenology of spring green-up. Proceedings of the National Academy of Sciences, 121(12). doi:10.1073/pnas.2308433121. PMID: 38437528
: Roy, P., Walter, Z., Berish, L., Ramage, H., & McCullagh, M. (2024). Motif-VI loop acts as a nucleotide valve in the west nile virus NS3 helicase. Nucleic Acids Research. doi:10.1093/nar/gkae500. PMID: 38884215
: Sadler, J. M., Koenig, L. E., Gorski, G., Carter, A. M., & Hall, R. O. (2024). Evaluating a process‐guided deep learning approach for predicting dissolved oxygen in streams. Hydrological Processes, 38(9). doi:10.1002/hyp.15270
: Sealey, M. (2024). Exploring deep learning methods for missing data imputation in longitudinal electronic health record data (Doctoral dissertation, Oklahoma State University). HDL: 20.500.14446/344866
: Shaheen, N., Hossen, M. S., Akhter, K. T., Halima, O., Hasan, M. K., Wahab, A., Gamagedara, S., Bhargava, K., Holmes, T., Najar, F. Z., Khandaker, M., Peng, Z., Yang, Z., & Ahsan, N. (2024). Comparative seed proteome proﬁle reveals no alternation of major allergens in high-yielding mung bean cultivars. Journal of Agricultural and Food Chemistry. doi:10.1021/acs.jafc.4c01054
: Stoltz, K. R. & Borunda, M. F. (2024). Benchmarking DFT and supervised machine learning: An organic semiconducting polymer investigation. The Journal of Physical Chemistry A. doi:10.1021/acs.jpca.3c04905. PMID: 38261010
: Tae, H.-S., Ortells, M. O., Yousuf, A., Xu, S. Q., Akk, G., Adams, D. J., & Arias, H. R. (2024). Tabernanthalog and ibogainalog inhibit the α7 and α9α10 nicotinic acetylcholine receptors via diﬀerent mechanisms and with higher potency than the GABA_A receptor and Ca_V2.2 channel. Biochemical Pharmacology, 223, 116183. doi:10.1016/j.bcp.2024.116183. PMID: 38580167
: Thorat, A., Chauhan, R., Sartape, R., Singh, M. R., & Shah, J. K. (2024). Eﬀect of K⁺ force ﬁelds on ionic conductivity and charge dynamics of KOH in ethylene glycol. The Journal of Physical Chemistry B, 128(15), 3707–3719. doi:10.1021/acs.jpcb.3c08480. PMID: 38572661
: Tran, T. T. Q., Narayanan, C., Loes, A. N., Click, T. H., Pham, N., Létourneau, M., Harms, M. J., Calmettes, C., Agarwal, P. K., & Doucet, N. (2024). Ancestral sequence reconstruction dissects structural and functional diﬀerences among eosinophil ribonucleases. Journal of Biological Chemistry, 107280. doi:10.1016/j.jbc.2024.107280. PMID: 38588810
: Verma, A. K., Thorat, A. S., & Shah, J. K. (2024). Estimating ionic conductivity of ionic liquids: Nernst-einstein and einstein formalisms. Journal of Ionic Liquids, 100089. doi:10.1016/j.jil.2024.100089
: Vuppala, R. K. S. S., Krawczyk, Z., Paul, R., & Kara, K. (2024). Modeling advanced air mobility aircraft in data-driven reduced order realistic urban winds. Scientiﬁc Reports, 14(1). doi:10.1038/s41598-023-50719-8. PMID: 38172566
: Zhang, J., Ragab, T., Wang, M., Wang, W., Zhu, Y., Zhang, H., Wang, X., & Jiang, K. (2024). Eﬀect of graphene nanoplatelets relative size and polyethylene chain length on the enhancement of thermal conductivity of their composite. International Journal of Thermal Sciences, 195, 108617. doi:10.1016/j.ijthermalsci.2023.108617
: Zhang, J., Zhang, H., Ragab, T., Wang, W., Jin, Z., Zhu, Y., Wang, X., & Jiang, K. (2024). An atomistic level investigation of the PFDTES–graphene interfacial shear strength and the stick–slip mechanism. Langmuir. doi:10.1021/acs.langmuir.4c02265

2023

: Abraham, R. M. & Gonçalves, D. (2023). Boosting new physics searches in ttZ and tZj production with angular moments. The European Physical Journal C, 83(10). doi:10.1140/epjc/s10052-023-12148-9
: Acquah, F. A. & Mooers, B. H. M. (2023). Targeting RNA structure to inhibit editing in trypanosomes. International Journal of Molecular Sciences, 24(12), 10110. doi:10.3390/ijms241210110
: Adhikary, A., Barman, R. K., Bhattacherjee, B., De, A., Godbole, R. M., & Kulkarni, S. (2023). Long-lived NLSP in the NMSSM. Physical Review D, 108(3). doi:10.1103/physrevd.108.035020
: Ahsan, N., Fornelli, L., Najar, F. Z., Gamagedara, S., Hossan, M. R., Rao, R. S. P., Punyamurtula, U., Bauer, A., Yang, Z., Foster, S. B., & Kane, M. A. (2023). Proteomics evaluation of ﬁve economical commercial abundant protein depletion kits for enrichment of diseases-speciﬁc biomarkers from blood serum. PROTEOMICS. doi:10.1002/pmic.202300150
: Alghamdi, K. I., Bach, C. K., Spitler, J. D., & Istiaque, F. (2023). Modeling, simulating, and validating a novel three-ﬂuid heat exchanger (TriCoil^TM) for a residential heating and air-conditioning system integrating water-based thermal energy storage. Energy and Buildings, 113545. doi:10.1016/j.enbuild.2023.113545
: Arias, H. R., Pierce, S. R., Germann, A. L., Xu, S. Q., Ortells, M. O., Sakamoto, S., Manetti, D., Romanelli, M. N., Hamachi, I., & Akk, G. (2023). Chemical, pharmacological, and structural characterization of novel acrylamide-derived modulators of the GABA_A receptor. Molecular Pharmacology, MOLPHARM–AR–2023–000692. doi:10.1124/molpharm.123.000692. PMID: 37316350
: Banerjee, D., Popy, D. A., Leininger, B. C., Creason, T. D., Mapara, V. N., Furis, M., Borunda, M. F., & Saparov, B. (2023). Zero-dimensional broadband yellow light emitter (TMS)₃Cu₂I₅ for latent ﬁngerprint detection and solid-state lighting. ACS Applied Materials & Interfaces. doi:10.1021/acsami.3c04077. PMID: 37307198
: Barman, R. K., Dev, P. S. B., & Thapa, A. (2023). Constraining lepton ﬂavor violating higgs couplings at the HL-LHC in the vector boson fusion channel. Physical Review D, 107(7). doi:10.1103/physrevd.107.075018
: Bernard, D. N., Narayanan, C., Hempel, T., Bafna, K., Bhojane, P. P., Létourneau, M., Howell, E. E., Agarwal, P. K., & Doucet, N. (2023). Conformational exchange divergence along the evolutionary pathway of eosinophil-associated ribonucleases. Structure. doi:10.1016/j.str.2022.12.011. PMID: 36649708
: Brasher, B. (2023). Nature and origin of the horse creek structure, northeastern oklahoma: Quaternary(?) basement-involved thrust faulting in the midcontinent u.s. (Master’s thesis, Oklahoma State University). HDL: 20.500.14446/341370
: Calvert, C. T. & Schnitzler, E. G. (2023). Light absorption by cinnamaldehyde constituents of biomass burning organic aerosol modeled using time-dependent density functional theory. ACS Earth and Space Chemistry. doi:10.1021/acsearthspacechem.2c00344
: Carrera Lopez, D. A. (2023). Detection of the select agent Coniothyrium glycines, causal pathogen of red leaf blotch of soybeans using high-throughput sequencing data (Master’s thesis, Oklahoma State University). HDL: 11244/338902
: Crowell, E., Assefa, S., Torres, A., Rivera, S., Richardson, T., Vazquez-Sanroman, D., & Köhler, G. (2023). The eﬀect of opioid use on the gut microbiome and inﬂammation. In 7th annual joint research meeting: Biomedical, biological, neuroscience, physiology, forensics.
: Dcruz, R. & Babu, K. S. (2023). Resolving W boson mass shift and CKM unitarity violation in left-right symmetric models with a universal seesaw mechanism. Physical Review D, 108(9). doi:10.1103/physrevd.108.095011
: Dhakal, K., Kakani, V. G., Wagle, P., & Sharma, S. (2023). Regional switchgrass carbon sequestration estimates from high-frequency eddy covariance and mesonet observations. Agrosystems, Geosciences & Environment, 6(1). doi:10.1002/agg2.20328
: Dhakal, P., Gassaway, W., & Shah, J. K. (2023). Mapping the frontier orbital energies of imidazolium-based cations using machine learning. The Journal of Chemical Physics, 159(6). doi:10.1063/5.0155775. PMID: 37579028
: Fazelpour, E. (2023). Computational insights into biomolecule dynamics (Doctoral dissertation, Oklahoma State University). HDL: 20.500.14446/344194
: Gonçalves, D., Kaladharan, A., & Wu, Y. (2023). Gravitational waves, bubble proﬁle, and baryon asymmetry in the complex 2HDM. Physical Review D, 108(7). doi:10.1103/physrevd.108.075010
: Gonçalves, D., Kaladharan, A., & Wu, Y. (2023). Resonant top pair searches at the LHC: A window to the electroweak phase transition. Physical Review D, 107(7). doi:10.1103/physrevd.107.075040
: Graf Grachet, N., Proaño Cuenca, F., Garzon, C., Wu, Y., Marek, S. M., & Walker, N. (2023). Draft genome sequences of eleven isolates of ophiosphaerella spp., the causal agents of several turfgrass diseases including spring dead spot of bermudagrass and necrotic ring spot of kentucky bluegrass. PhytoFrontiers™. doi:10.1094/phytofr-02-23-0019-a
: Hu, H., Swift, A., Mauro-Herrera, M., Borrone, J., Borja, G., & Doust, A. N. (2023). Transcriptomic analysis of seed development in paysonia auriculata (brassicaceae) identiﬁes genes involved in hydroxy fatty acid biosynthesis. Frontiers in Plant Science, 13. doi:10.3389/fpls.2022.1079146. PMID: 36714715
: Ishola, O. A. (2023). A new stochastic pore-scale simulation and machine learning approach to predicting permeability and tortuosity of heterogeneous porous media (Doctoral dissertation, Oklahoma State University). HDL: 11244/339014
: Islam, M. A. (2023). Structural conﬁguration of amorphous silica surface with diﬀerent terminating groups using classical and ab initio molecular dynamics (Master’s thesis, Arkansas State University). Retrieved from https://www.proquest.com/docview/2856701269
: Islam, M. R. & Feng, Y. (2023). Achieving targeted delivery of chemotherapeutic particles to small airway tumors via pulmonary route using endotracheal catheters: A CFPD study. Pharmaceuticals, 16(2), 158. doi:10.3390/ph16020158. PMID: 37259309
: Judkins, M. E., Roemer, G. W., Millsap, B. A., Barnes, J. G., Bedrosian, B. E., Clarke, S. L., Domenech, R., Herring, G., Lamont, M., Smith, B. W., Stahlecker, D. W., Stuber, M. J., Warren, W. C., & Bussche, R. A. V. D. (2023). A 37 k SNP array for the management and conservation of golden eagles (aquila chrysaetos). Conservation Genetics. doi:10.1007/s10592-023-01508-3
: Jurko, D. M. (2023). Determination of the quantity of earth’s gravity imparted on particles in a rotating cylinder ﬂuid regime based on particle density and rotation speed (Master’s thesis, Oklahoma State University). HDL: 11244/338930
: Lee, E., McLeod, M. J., Redzic, J. S., Marcolin, B., Thorne, R. E., Agarwal, P., & Eisenmesser, E. Z. (2023). Identifying structural and dynamic changes during the biliverdin reductase b catalytic cycle. Frontiers in Molecular Biosciences, 10. doi:10.3389/fmolb.2023.1244587. PMID: 37645217
: Liu, Y., Erbilgin, N., Cappa, E. P., Chen, C., Ratcliﬀe, B., Wei, X., Klutsch, J. G., Ullah, A., Azcona, J. S., Thomas, B. R., & El-Kassaby, Y. A. (2023). Decoupling of height growth and drought or pest resistance tradeoﬀs is revealed through multiple common-garden experiments of lodgepole pine. Evolution. doi:10.1093/evolut/qpad004. PMID: 36637132
: LoPresti, E. F., Pan, V. S., Girvin, C., Barber, G., Jaeger, S., & Orrock, J. L. (2023). Sandy seeds: Armor or invisibility cloak? mucilage-bound sand physically protects seeds from rodents and invertebrates. Journal of Ecology. doi:10.1111/1365-2745.14077
: Lu, Y., Miao, Z., Sahraeian, P., & Balasundaram, B. (2023). On atomic cliques in temporal graphs. Optimization Letters. doi:10.1007/s11590-023-01975-0
: Maharjan, R. (2023). Investigation of hidden structure and the dipole moment distribution in liquid water and ice (Doctoral dissertation, Oklahoma State University). HDL: 20.500.14446/344212
: Martinez-Miranda, L. & Borunda, M. (2023). The eﬀect of the buried surface on the structure and the transport of charges in liquid crystal organic photovoltaics. Bulletin of the American Physical Society.
: Meili, C. (2023). Exploring the diversity, community structure, and evolutionary drivers of anaerobic gut fungi in herbivorous mammals (Master’s thesis, Oklahoma State University). HDL: 11244/338943
: Meili, C. H., Jones, A. L., Arreola, A. X., Habel, J., Pratt, C. J., Hanafy, R. A., Wang, Y., Yassin, A. S., TagElDein, M. A., Moon, C. D., Janssen, P. H., Shrestha, M., Rajbhandari, P., Nagler, M., Vinzelj, J. M., Podmirseg, S. M., Stajich, J. E., Goetsch, A. L., Hayes, J., Young, D., Fliegerova, K., Grilli, D. J., Vodička, R., Moniello, G., Mattiello, S., Kashef, M. T., Nagy, Y. I., Edwards, J. A., Dagar, S. S., Foote, A. P., Youssef, N. H., & Elshahed, M. S. (2023). Patterns and determinants of the global herbivorous mycobiome. Nature Communications, 14(1). doi:10.1038/s41467-023-39508-z
: Najar, F. Z., Linde, E., Murphy, C. L., Borin, V. A., Wang, H., Haider, S., & Agarwal, P. K. (2023). Future COVID19 surges prediction based on SARS-CoV-2 mutations surveillance. eLife, 12. doi:10.7554/elife.82980. PMID: 36655992
: Oz, F. & Kara, K. (2023a). Hypersonic boundary-layer stability over a cone with combined local cooling and local metasurface treatment. In AIAA AVIATION 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-3419
: Oz, F. & Kara, K. (2023b). Hypersonic boundary-layer stability with local cooling and local metasurface treatment. In AIAA SCITECH 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-0818
: Park, J. H., Prasad, V., Newsom, S., Najar, F., & Rajan, R. (2023). Idmotif: An interactive motif identiﬁcation in protein sequences. IEEE Computer Graphics and Applications, 1–13. doi:10.1109/mcg.2023.3345742
: Pawar, S., San, O., Rasheed, A., & Vedula, P. (2023). Frame invariant neural network closures for kraichnan turbulence. Physica A: Statistical Mechanics and its Applications, 609, 128327. doi:10.1016/j.physa.2022.128327
: Pierce, S. R., Germann, A. L., Xu, S. Q., Menon, S. L., Ortells, M. O., Arias, H. R., & Akk, G. (2023). Mutational analysis of anesthetic binding sites and their eﬀects on GABA_A receptor activation and modulation by positive allosteric modulators of the α7 nicotinic receptor. Biomolecules, 13(4), 698. doi:10.3390/biom13040698. PMID: 37189445
: Robb, C. S., Vuppala, R. K. S. S., Paul, R. C., & Kara, K. (2023). Flight dynamics of a ﬂying wing aircraft featuring the bell spanload. In AIAA SCITECH 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-2610
: Robb, C. & Paul, R. (2023). Aerodynamic modeling of a ﬂying wing featuring ludwig prandtl’s bell spanload. Aerospace, 10(7), 613. doi:10.3390/aerospace10070613
: Schoch, T. D. & Weaver, J. D. (2023). Eﬀorts toward synthetic photosynthesis: Visible light-driven CO₂ valorization. Journal of the American Chemical Society. doi:10.1021/jacs.3c04837. PMID: 37390455
: Schoch, T., Wyneken, H., Despain, M., & Weaver, J. D. (2023). Probing the visible light driven geometrical isomerization of 4-arylbut-3-ene-2-amines. ChemCatChem. doi:10.1002/cctc.202301002
: Shaheen, N., Najar, F. Z., Chowdhury, U. F., Chowdhury, M. A. A., Reza, R. N., Halima, O., Foster, S. B., Khan, H., Islam, M. R., & Ahsan, N. (2023). Muscle proteome proﬁle and potential allergens of premature hilsa shad (Tenualosa ilisha). Journal of Food Composition and Analysis, 123, 105641. doi:10.1016/j.jfca.2023.105641
: Shumaker, F. A. & Weinert, C. S. (2023). Absorbance and emission studies in solution and the solid state and band gap determination of Prⁱ₃Ge(GePh₂)₄GePrⁱ₃. Main Group Chemistry, 22(2), 239–250. doi:10.3233/mgc-220100
: Tae, H.-S., Ortells, M. O., Tekarli, B. J., Manetti, D., Romanelli, M. N., McIntosh, J. M., Adams, D. J., & Arias, H. R. (2023). DM506 (3-methyl-1,2,3,4,5,6-hexahydroazepino[4,5-b]indole fumarate), a novel derivative of ibogamine, inhibits α7 and α9α10 nicotinic acetylcholine receptors by diﬀerent allosteric mechanisms. ACS Chemical Neuroscience. doi:10.1021/acschemneuro.3c00212. PMID: 37386821
: Teye‐Kau, J. H. G., Ayodele, M. J., & Pitre, S. P. (2023). Vitamin b₁₂‐photocatalyzed cyclopropanation of electron‐deﬁcient alkenes using dichloromethane as the methylene source. Angewandte Chemie International Edition. doi:10.1002/anie.202316064. PMID: 38015966
: Vuppala, R. K. S. S. & Kara, K. (2023). Deep learning for realistic wind ﬁeld prediction in various urban morphologies for application to small unmanned aerial systems. In AIAA SCITECH 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-1757
: Wang, H., Rizvi, S. R., Dong, D., Lou, J., Wang, Q., Sopipong, W., Su, Y., Najar, F., Agarwal, P. K., Kozielski, F., & Haider, S. (2023). Emerging variants of SARS-CoV-2 NSP10 highlight strong functional conservation of its binding to two non-structural proteins, NSP14 and NSP16. eLife, 12. doi:10.7554/elife.87884
: Welfer, G. A., Borin, V. A., Cortez, L. M., Opresko, P. L., Agarwal, P. K., & Freudenthal, B. D. (2023). Altered nucleotide insertion mechanisms of disease-associated TERT variants. Genes, 14(2), 281. doi:10.3390/genes14020281. PMID: 36833208

2022

: Abraham, R. M., Gonçalves, D., Han, T., Leung, S. C. I., & Qin, H. (2022). Directly probing the higgs-top coupling at high scales. Physics Letters B, 825, 136839. doi:10.1016/j.physletb.2021.136839
: Acquah, F. A. (2022). Targeting RNA substrates in the discovery of inhibitors of trypanosome mitochondria RNA editing (Doctoral dissertation). Retrieved from https://www.proquest.com/docview/2681958450
: Aghayan, A. & Jaiswal, P. (2022). System and method for obtaining minimum-phase source-signatures from multi-channel multi-oﬀset seismic data. WO/2022/098991. Oklahoma State University. Retrieved from https://patents.google.com/patent/WO2022098991A1/
: Ahmed, S. E., Dabaghian, P. H., San, O., Bistrian, D. A., & Navon, I. M. (2022). Dynamic mode decomposition with core sketch. Physics of Fluids. doi:10.1063/5.0095163
: Alam, M. & Kara, K. (2022a). Characterization of sweeping jet actuator ﬂow ﬁeld using DMD analysis. Bulletin of the American Physical Society.
: Alam, M. & Kara, K. (2022b). The inﬂuence of exit nozzle geometry on sweeping jet actuator performance. Fluids, 7(2), 69. doi:10.3390/ﬂuids7020069
: Alam, M., Kara, K., & Alexander, A. (2022). Reduction of spanwise ﬂow over a swept wing using an air curtain produced by rectangular slot. In AIAA AVIATION 2022 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2022-3296
: Anderson, V. M., Wendt, K. L., Caughron, J. B., Matlock, H. P., Rangu, N., Najar, F. Z., Miller, A. N., Luttenton, M. R., & Cichewicz, R. H. (2022). Assessing microbial metabolic and biological diversity to inform natural product library assembly. Journal of Natural Products, 85(4), 1079–1088. doi:10.1021/acs.jnatprod.1c01197
: Balasundaram, B., Borrero, J. S., & Pan, H. (2022). Graph signatures: Identiﬁcation and optimization. European Journal of Operational Research, 296(3), 764–775. doi:10.1016/j.ejor.2021.03.051
: Barman, R. K., Gonçalves, D., & Kling, F. (2022). Machine learning the higgs boson-top quark CP phase. Physical Review D, 105(3). doi:10.1103/physrevd.105.035023
: Burba, C. M., Feightner, K., Liu, M., & Hawari, A. (2022). The eﬀect of ﬂuorinated solvents on the physicochemical properties, ionic association, and free volume of a prototypical solvate ionic liquid. ChemPhysChem. doi:10.1002/cphc.202100548
: Cappa, E. P., Chen, C., Klutsch, J. G., Sebastian-Azcona, J., Ratcliﬀe, B., Wei, X., Ros, L. D., Ullah, A., Liu, Y., Benowicz, A., Sadoway, S., Mansﬁeld, S. D., Erbilgin, N., Thomas, B. R., & El-Kassaby, Y. A. (2022). Multiple-trait analyses improved the accuracy of genomic prediction and the power of genome-wide association of productivity and climate change-adaptive traits in lodgepole pine. BMC Genomics, 23(1). doi:10.1186/s12864-022-08747-7
: Cappa, E. P., Klutsch, J. G., Sebastian-Azcona, J., Ratcliﬀe, B., Wei, X., Ros, L. D., Liu, Y., Chen, C., Benowicz, A., Sadoway, S., Mansﬁeld, S. D., Erbilgin, N., Thomas, B. R., & El-Kassaby, Y. A. (2022). Integrating genomic information and productivity and climate-adaptability traits into a regional white spruce breeding program. PLOS ONE, 17(3), e0264549. doi:10.1371/journal.pone.0264549
: Cappa, E. P., Ratcliﬀe, B., Chen, C., Thomas, B. R., Liu, Y., Klutsch, J., Wei, X., Azcona, J. S., Benowicz, A., Sadoway, S., Erbilgin, N., & El-Kassaby, Y. A. (2022). Improving lodgepole pine genomic evaluation using spatial correlation structure and SNP selection with single-step GBLUP. Heredity. doi:10.1038/s41437-022-00508-2. PMID: 35181761
: Chen, S., Wang, Z., Yao, B., & Liu, T. (2022). Prediction of diabetic retinopathy using longitudinal electronic health records. In 2022 IEEE 18th international conference on automation science and engineering (CASE). IEEE. doi:10.1109/case49997.2022.9926605
: Davidova, I. A., Duncan, K. E., Wiley, G., & Najar, F. Z. (2022). Desulfoferrobacter suﬂitae gen. nov., sp. nov., a novel sulphate-reducing bacterium in the deltaproteobacteria capable of autotrophic growth with hydrogen or elemental iron. International Journal of Systematic and Evolutionary Microbiology, 72(8). doi:10.1099/ijsem.0.005483
: de Lima, C. H., Stolarski, D., & Wu, Y. (2022). Status of negative coupling modiﬁers for extended higgs sectors. Phys. Rev. D, 105, 035019. doi:10.1103/PhysRevD.105.035019
: Dhakal, P. (2022). Leveraging atomistic simulations and machine learning for the design of ionic liquids as electrolytes for battery application (Doctoral dissertation, Oklahoma State University). HDL: 11244/337190
: Dhakal, P., Das, S. K., & Shah, J. K. (2022). Revealing hydrogen bond dynamics between ion pairs in binary and reciprocal ionic liquid mixtures. Journal of Molecular Liquids, 368, 120515. doi:10.1016/j.molliq.2022.120515
: Duncan, K. T., Elshahed, M. S., Sundstrom, K. D., Little, S. E., & Youssef, N. H. (2022). Inﬂuence of tick sex and geographic region on the microbiome of dermacentor variabilis collected from dogs and cats across the united states. Ticks and Tick-borne Diseases, 13(5), 102002. doi:10.1016/j.ttbdis.2022.102002
: Espindola, A. S., Cardwell, K. F., Martin, F. N., Hoyt, P. R., Marek, S., Schneider, W., & Garzon, C. D. (2022). A step towards validation of high-throughput sequencing for the identiﬁcation of plant pathogenic oomycetes. Phytopathology®. doi:10.1094/phyto-11-21-0454-r. PMID: 35345904
: Gholizadeh, H., Friedman, M. S., McMillan, N. A., Hammond, W. M., Hassani, K., Sams, A. V., Charles, M. D., Garrett, D. R., Joshi, O., Hamilton, R. G., Fuhlendorf, S. D., Trowbridge, A. M., & Adams, H. D. (2022). Mapping invasive alien species in grassland ecosystems using airborne imaging spectroscopy and remotely observable vegetation functional traits. Remote Sensing of Environment, 271, 112887. doi:10.1016/j.rse.2022.112887
: Ghosh, A. & Sarnak, P. (2022). Integral points on markoﬀ type cubic surfaces. Inventiones mathematicae. doi:10.1007/s00222-022-01114-z
: Gonçalves, D., Kaladharan, A., & Wu, Y. (2022). Electroweak phase transition in the 2HDM: Collider and gravitational wave complementarity. Physical Review D, 105(9). doi:10.1103/physrevd.105.095041
: Halima, O., Najar, F. Z., Wahab, A., Gamagedara, S., Chowdhury, A. I., Foster, S. B., Shaheen, N., & Ahsan, N. (2022). Lentil allergens identiﬁcation and quantiﬁcation: An update from omics perspective. Food Chemistry: Molecular Sciences, 4, 100109. doi:10.1016/j.fochms.2022.100109
: Hu, P., Cai, C., Yi, H., Zhao, J., Feng, Y., & Wang, Q. (2022). Aiding airway obstruction diagnosis with computational ﬂuid dynamics and convolutional neural network: A new perspective and numerical case study. Journal of Fluids Engineering. doi:10.1115/1.4053651
: Hu, X., Carver, B. F., El-Kassaby, Y. A., Zhu, L., & Chen, C. (2022). Weighted kernels improve multi-environment genomic prediction. Heredity. doi:10.1038/s41437-022-00582-6. PMID: 36522412
: Ishola, O., Alexander, A., & Vilcáez, J. (2022). Statistical and neural network analysis of the relationship between the stochastic nature of pore connectivity and ﬂow properties of heterogeneous rocks. Journal of Natural Gas Science and Engineering, 105, 104719. doi:10.1016/j.jngse.2022.104719
: Ishola, O. & Vilcáez, J. (2022). Machine learning modeling of permeability in 3D heterogeneous porous media using a novel stochastic pore-scale simulation approach. Fuel, 321, 124044. doi:10.1016/j.fuel.2022.124044
: Jing, G., Bai, H., George, J., Chakrabortty, A., & Sharma, P. K. (2022). Distributed cooperative multi-agent reinforcement learning with directed coordination graph. In 2022 american control conference (ACC). IEEE. doi:10.23919/acc53348.2022.9867152
: Khanov, M. & Akbas, E. (2022). Approximating dense ReLU networks using linear regression. In KDD 2022 undergraduate consortium. ACM. Retrieved from https://www.kdd.org/kdd2022/papers/13_Maxim%20A%20Khanov.pdf
: Landua, T. R., Vuppala, R. K. S. S., & Kara, K. (2022). Investigation of airﬂow around buildings using large eddy simulations for unmanned air systems applications. In AIAA SCITECH 2022 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2022-1688. HDL: 11244/335834
: Lantz, E., Mokadem, R. E., Schoch, T., Fleske, T., & Weaver, J. D. (2022). A new twist for stork-danheiser products enabled by visible light mediated Trans-cyclohexene formation; access to acyclic distal enones. Chemical Science. doi:10.1039/d1sc03774a. PMID: 36093001
: Li, B. & Feng, Y. (2022). In silico study to enhance delivery eﬃciency of charged nanoscale nasal spray aerosols to the olfactory region using external magnetic ﬁelds. Bioengineering, 9(1), 40. doi:10.3390/bioengineering9010040. PMID: 35049749
: Lu, Y., Miao, Z. [Zhuqi], Sahraeian, P., & Balasundaram, B. (2022). On atomic cliques in temporal graphs. Optimization Online. Retrieved from https://optimization-online.org/?p=19935
: Lu, Y., Salemi, H., Balasundaram, B., & Buchanan, A. (2022). On fault-tolerant low-diameter clusters in graphs. INFORMS Journal on Computing. doi:10.1287/ijoc.2022.1231
: Miao, Z. [Zelong]. (2022). Immune signaling pathways and digestion-related proteins in the manduca sexta larvae (Doctoral dissertation, Oklahoma State University). HDL: 11244/337302
: Oz, F., Goebel, T. E., Jewell, J. S., & Kara, K. (2022). Local wall cooling eﬀects on hypersonic boundary-layer stability. Journal of Spacecraft and Rockets, 1–15. doi:10.2514/1.a35404
: Oz, F. & Kara, K. (2022). Hypersonic boundary layer stability of local cooling strip and porous surface. Bulletin of the American Physical Society.
: Pan, H., Balasundaram, B., & Borrero, J. (2022). A decomposition branch-and-cut algorithm for the maximum cross-graph k-club problem. OpenProceedings.org. doi:10.48786/INOC.2022.04
: Pan, V. S., Girvin, C., & LoPresti, E. F. (2022). Anchorage by seed mucilage prevents seed dislodgement in high surface ﬂow: A mechanistic investigation. Annals of Botany. doi:10.1093/aob/mcac045. PMID: 35325924
: Poudel, P., Bello, N. M., Lollato, R. P., & Alderman, P. D. (2022). A hierarchical bayesian approach to dynamic ordinary diﬀerential equations modeling for repeated measures data on wheat growth. Field Crops Research, 283, 108549. doi:10.1016/j.fcr.2022.108549
: Proaño Cuenca, F., Espı́ndola, A. S., & Garzon, C. (2022). Detection of phytophthora, pythium, globisporangium, hyaloperonospora and plasmopara species in high-throughput sequencing data by in silico and in vitro analysis using microbe ﬁnder (MiFi®). PhytoFrontiers^TM. doi:10.1094/phytofr-04-22-0039-ﬁ
: Proaño Cuenca, F., Lopez, D. A. C., Luster, D. G., Zeller, K. A., & Cardwell, K. (2022). Genome sequence resources for ﬁve isolates of coniothyrium glycines, causal pathogen of red leaf blotch of soybeans. PhytoFrontiers^TM. doi:10.1094/phytofr-10-22-0113-a
: Rajbanshi, B. & Guruacharya, A. (2022). Panama: An open-source educational app for ion channel biophysics simulation. Frontiers in Neuroinformatics, 16. doi:10.3389/fninf.2022.813940. PMID: 35356446
: Schröder, G. C., O’Dell, W. B., Webb, S. P., Agarwal, P. K., & Meilleur, F. (2022). Capture of activated dioxygen intermediates at the copper-active site of a lytic polysaccharide monooxygenase. Chemical Science. doi:10.1039/d2sc05031e. PMID: 36507176
: Scott, D. (2022). Adaptive streaming discriminant analysis regularization, error rate estimation, and semi-supervised learning (Doctoral dissertation, Oklahoma State University). HDL: 11244/337086
: Secka, J., Pal, A., Acquah, F. A., Mooers, B. H. M., Karki, A. B., Mahjoub, D., Fakhr, M. K., Wallace, D. R., Okada, T., Toyooka, N., Kuta, A., Koduri, N., Herndon, D., Roberts, K. P., Wang, Z., Hileman, B., Rajagopal, N., & Hussaini, S. R. (2022). Coupling of acceptor-substituted diazo compounds and tertiary thioamides: Synthesis of enamino carbonyl compounds and their pharmacological evaluation. RSC Advances, 12(30), 19431–19444. doi:10.1039/d2ra02415b. PMID: 35865562
: Shimizu, K., de Freitas, A. A., & Burba, C. M. (2022). Cation-anion and cation-cation interactions in mixtures of hydroxy-functionalized and aprotic ionic liquids. Journal of Ionic Liquids, 100022. doi:10.1016/j.jil.2022.100022
: Silva Lara, I. (2022). Role of dietary zinc in shaping the gastrointestinal microbiota in nursery pigs (Doctoral dissertation, Oklahoma State University). HDL: 11244/337323
: Spitler, J. D. & West, T. N. (2022). Approximate g-functions for selection of borehole ﬁeld conﬁgurations used with ground-source heat pump systems. In European geothermal congress. HDL: 11244/336597
: Spitler, J., West, T., Liu, X., & Borshon, I. (2022). Open library of g-functions for 34,321 conﬁgurations. In Proceedings of the IGSHPA research track 2022. International Ground Source Heat Pump Association. doi:10.22488/okstate.22.000040
: Totty, C. D. (2022). Computational ﬂuid dynamics study for stability analysis of an unmanned aircraft mass simulator with rocket-assisted take-oﬀ (Master’s thesis, Oklahoma State University). HDL: 11244/337239
: Vuppala, R. K. S. S. [Rohit K S S] & Kara, K. (2022). Wind ﬁeld prediction in urban spaces for small unmanned aerial systems using convolutional autoencoders. In AIAA AVIATION 2022 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2022-3605
: Vuppala, R. K. S. S. [Rohit K. S. S.] & Kara, K. (2022). A non-intrusive reduced order model using deep learning for realistic wind data generation for small unmanned aerial systems in urban spaces. AIP Advances, 12(8), 085020. doi:10.1063/5.0098835
: Vuppala, R. K. S. S. [Rohit Kameshwara Sampath Sai] & Kara, K. (2022). Physics informed neural network model for wind ﬁeld prediction in urban spaces for small unmanned aerial systems. In Aps division of ﬂuid dynamics meeting abstracts. APS Meeting Abstracts.
: Weaver, T. M., Click, T. H., Khoang, T. H., Washington, M. T., Agarwal, P. K., & Freudenthal, B. D. (2022). Mechanism of nucleotide discrimination by the translesion synthesis polymerase rev1. Nature Communications, 13(1). doi:10.1038/s41467-022-30577-0. PMID: 35610266
: Xie, J. & Yao, B. (2022). Physics-constrained deep active learning for spatiotemporal modeling of cardiac electrodynamics. Computers in Biology and Medicine, 105586. doi:10.1016/j.compbiomed.2022.105586. PMID: 35751197
: Yadav, A. (2022). Exploring environmental adaptations and habitat preferences in three microbial lineages using comparative (meta)genomic approaches (Doctoral dissertation, Oklahoma State University). HDL: 11244/337886
: Yukihara, E., Christensen, J., & Togno, M. (2022). Demonstration of an optically stimulated luminescence (OSL) material with reduced quenching for proton therapy dosimetry: MgB₄O₇:Ce,Li. Radiation Measurements, 152, 106721. doi:10.1016/j.radmeas.2022.106721
: Zhao, W. & Kapania, R. K. (2022). Buckling analysis and optimization of stiﬀened variable angle tow laminates with a cutout considering manufacturing constraints. Journal of Composites Science, 6(3), 80. doi:10.3390/jcs6030080

2021

: Acquah, F. A., Paramel, M., Kuta, A., Hussaini, S. R., Wallace, D. R., & Mooers, B. H. M. (2021). Simulations of promising indolizidine—α6-β2 nicotinic acetylcholine receptor complexes. International Journal of Molecular Sciences, 22(15), 7934. doi:10.3390/ijms22157934. PMID: 34360698
: ALAM, M., Marshall, T., & Kara, K. (2021). Eﬀects of exit nozzle geometric parameters on sweeping jet actuator performance. Bulletin of the American Physical Society.
: Alderman, P. D. (2021). Parallel gridded simulation framework for DSSAT-CSM (version 4.7.5.21) using MPI and NetCDF. 14(10), 6541–6569. doi:10.5194/gmd-14-6541-2021
: Bai, H., Bhar, K., George, J., & Busart, C. (2021). Distributed bayesian parameter inference for physics-informed neural networks. In 2021 60th IEEE conference on decision and control (CDC). IEEE. doi:10.1109/cdc45484.2021.9683353
: Baird, A. B. (2021). Retrospective simulation analysis of dual-purpose and grain-only wheat production across oklahoma with parallel gridded dssat-csm. (Master’s thesis, Oklahoma State University). HDL: 20.500.14446/339598
: Bhandari, D. (2021). Molecular dynamics study of protein mortalin and its mutants with anti-cancer agents ﬂex hets (Doctoral dissertation, Oklahoma State University). HDL: 11244/333785
: Chaudhary, B. P. [Bharat P], Zoetewey, D. L., McCullagh, M. J., & Mohanty, S. (2021). NMR and MD simulations reveal the impact of the V23D mutation on the function of yeast oligosaccharyltransferase subunit Ost4. Glycobiology. doi:10.1093/glycob/cwab002. PMID: 33442744
: Chaudhary, B. P. [Bharat Prasad]. (2021). Expression, puriﬁcation, nmr structure, and molecular dynamics studies of Ost4 and Ost4V23D: A critical subunit of yeast oligosaccharyltransferase (Doctoral dissertation, Oklahoma State University). HDL: 11244/330899
: Cook, J. C. (2021). Development of computer programs for fast computation of g-functions and automated ground heat exchanger design (Master’s thesis, Oklahoma State University). HDL: 11244/335489
: Couger, M. B., Roy, S. W., Anderson, N., Gozashti, L., Pirro, S., Millward, L. S., Kim, M., Kilburn, D., Liu, K. J., Wilson, T. M., Epps, C. W., Dizney, L., Ruedas, L. A., & Campbell, P. (2021). Sex chromosome transformation and the origin of a male-speciﬁc x chromosome in the creeping vole. Science, 372(6542), 592–600. doi:10.1126/science.abg7019. PMID: 33958470
: Al-Danoon, O. I. (2021). Overexpression, characterization, and structure-function studies of pheromone binding proteins from european corn borer, ostrinia nubilalis (Doctoral dissertation, Oklahoma State University). HDL: 11244/333771
: Al-Danoon, O., Mazumder, S., Chaudhary, B. P., Nukala, V., Bishop, B., Cahoon, G., & Mohanty, S. (2021). Structural and functional characterization of european corn borer, ostrinia nubilalis, pheromone binding protein 3. Journal of Agricultural and Food Chemistry. doi:10.1021/acs.jafc.1c03775. PMID: 34758619
: Day, J. I., Grotjahn, S., Senaweera, S., Koenig, B., & III, J. D. W. (2021). Deﬂuorodearomatization: A photocatalytic birch-like reduction that enables C–C bond formation and provides access to unnatural cannabinoids. The Journal of Organic Chemistry. doi:10.1021/acs.joc.1c00169. PMID: 34076434
: Dhakal, K., Kakani, V. G., Wagle, P., & Sharma, S. (2021). Empirical approach to estimate net ecosystem exchange using high frequency mesonet observations across potential switchgrass establishment landscapes in oklahoma. doi:10.1002/essoar.10508573.1
: Espindola, A. S., Sempertegui-Bayas, D., Bravo-Padilla, D. F., reire-Zapata, V. F., Ochoa-Corona, F., & Cardwell, K. F. (2021). TASPERT: Target-speciﬁc reverse transcript pools to improve HTS plant virus diagnostic s. Viruses, 13(7), 1223. doi:10.3390/v13071223. PMID: 34202758
: Feng, Y., Zhao, J., Spinolo, M., Lane, K., Leung, D., Marshall, D., & Mlinaric, P. (2021). Assessing the ﬁltration eﬀectiveness of a portable ultraviolet air cleaner on airborne SARS-CoV-2 laden droplets in a patient room: A numerical study. Aerosol and Air Quality Research, 21. doi:10.4209/aaqr.200608
: Gaddam, M. G. (2021). Flow characterization inside airways with unsteady breathing patterns (Doctoral dissertation, Oklahoma State University). HDL: 11244/333753
: Gaddam, M. G. & Santhanakrishnan, A. (2021). Eﬀects of varying inhalation duration and respiratory rate on human airway ﬂow. Fluids, 6(6), 221. doi:10.3390/ﬂuids6060221
: Galdadas, I., Qu, S., Oliveira, A. S. F., Olehnovics, E., Mack, A. R., Mojica, M. F., Agarwal, P. K., Tooke, C. L., Gervasio, F. L., Spencer, J., Bonomo, R. A., Mulholland, A. J., & Haider, S. (2021). Allosteric communication in class a β-lactamases occurs via cooperative coupling of loop dynamics. eLife, 10. doi:10.7554/elife.66567. PMID: 33755013
: Han, T., Li, S., Su, S., Su, W., & Wu, Y. (2021). Heavy higgs bosons in 2HDM at a muon collider. Physical Review D, 104(5). doi:10.1103/physrevd.104.055029
: Hayatifar, A. (2021). Exploration of Lewis acidity and ﬂuorophilicity of germanium compounds and their applications in C-F bond activation (Doctoral dissertation, Oklahoma State University). HDL: 11244/330877
: Hayatifar, A., Elifritz, E. A., Bloom, M. B., Pixley, K. M., Fennell, C. J., & Weinert, C. S. (2021). Direct amidation of acid ﬂuorides using germanium amides. Dalton Transactions, 50(13), 4490–4493. doi:10.1039/d1dt00754h. PMID: 33877168
: Hoitsma, N. M., Click, T. H., Agarwal, P. K., & Freudenthal, B. D. (2021). Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker. Computational and Structural Biotechnology Journal, 19, 3293–3302. doi:10.1016/j.csbj.2021.05.035
: Ismail, A., Abraham, R. M., & Kling, F. (2021). Neutral current neutrino interactions at FASERν. Physical Review D, 103(5). doi:10.1103/physrevd.103.056014
: Jayaraman, B. & Brasseur, J. G. (2021). Transition in atmospheric boundary layer turbulence structure from neutral to convective, and large-scale rolls. Journal of Fluid Mechanics, 913. doi:10.1017/jfm.2021.3
: Kalgotra, P. & Sharda, R. (2021). When will i get out of the hospital? modeling length of stay using comorbidity networks. Journal of Management Information Systems, 38(4), 1150–1184. doi:10.1080/07421222.2021.1990618
: Kelly, C. (2021). Project monarch: The application of ludwig prandtl’s bell-curve span loading to a straight, high performance sailplane wing (Master’s thesis, Oklahoma State University). HDL: 11244/333811
: Kolewe, E. L., Feng, Y., & Fromen, C. A. (2021). Realizing lobe-speciﬁc aerosol targeting in a 3d-printed in vitro lung model. Journal of Aerosol Medicine and Pulmonary Drug Delivery, 34(1), 42–56. doi:10.1089/jamp.2019.1564. PMID: 32678723
: Latiﬁ, R., Palluccio, T. D., Ye, W., Minnick, J. L., Glinton, K. S., Rybak-Akimova, E. V., de Visser, S. P., & Tahsini, L. (2021). pH changes that induce an axial ligand eﬀect on nonheme iron(IV) oxo complexes with an appended aminopropyl functionality. Inorganic Chemistry. doi:10.1021/acs.inorgchem.1c01312. PMID: 34291939
: Li, W., Hou, W., Mishra, D., & Tutumluer, E. (2021). Modeling the dynamic behavior of track transitions along shared track corridors. Frontiers in Built Environment, 7. doi:10.3389/fbuil.2021.693744
: Moen, D. S. (2021). Improving inference and avoiding over-interpretation of hidden-state diversiﬁcation models: Specialized plant breeding has no eﬀect on diversiﬁcation in frogs. Evolution. doi:10.1111/evo.14406. PMID: 34854483
: Moen, D. S., Ravelojaona, R. N., Hutter, C. R., & Wiens, J. J. (2021). Testing for adaptive radiation: A new approach applied to madagascar frogs. Evolution. doi:10.1111/evo.14328. PMID: 34396527
: Narayanan, S., Ritchey, J. C., Patil, G., Narasaraju, T., More, S., Malayer, J., Saliki, J., Kaul, A., Agarwal, P. K., & Ramachandran, A. (2021). SARS-CoV-2 genomes from oklahoma, united states. Frontiers in Genetics, 11. doi:10.3389/fgene.2020.612571. PMID: 33613621
: Niyibizi, B., Brorsen, B. W., & Park, E. (2021). Using bayesian kriging for spatial smoothing of trends in non-normal yield densities. ahead-of-print(ahead-of-print). doi:10.1108/afr-04-2021-0042
: Oz, F., Evans, E., Goebel, T., Kara, K., Manimala, J., & Jewell, J. (2021). Interaction of ultrasonic acoustic waves and metasurface structures for hypersonic boundary-layer stability applications. Bulletin of the American Physical Society.
: Oz, F. & Kara, K. (2021). Eﬀects of local cooling on hypersonic boundary-layer stability. In AIAA scitech 2021 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2021-0940
: Poudel, P. (2021). Study of winter wheat growth and development in oklahoma using a hierarchical bayesian approach (Doctoral dissertation, Oklahoma State University). HDL: 20.500.14446/339595
: Poudel, P., Bello, N. M., Marburger, D. A., Carver, B. F., Liang, Y., & Alderman, P. D. (2021). Ecophysiological modeling of yield and yield components in winter wheat using hierarchical bayesian analysis. Crop Science, 62(1), 358–373. doi:10.1002/csc2.20652
: Premathilake, H. U. (2021). Elucidation of structural and functional characteristics of the gut microbiome of beef cattle under water stress (Doctoral dissertation, Oklahoma State University). HDL: 11244/333656
: Redzic, J. S., Duﬀ, M. R., Blue, A., Pitts, T. M., Agarwal, P., & Eisenmesser, E. Z. (2021). Modulating enzyme function via dynamic allostery within biliverdin reductase b. Frontiers in Molecular Biosciences, 8. doi:10.3389/fmolb.2021.691208. PMID: 34095235
: Robinson, K., Yang, Q., Li, H., Zhang, L., Aylward, B., Arsenault, R. J., & Zhang, G. (2021). Butyrate and forskolin augment host defense, barrier function, and disease resistance without eliciting inﬂammation. Frontiers in Nutrition, 8. doi:10.3389/fnut.2021.778424. PMID: 34778349
: Spitler, J. & Cook, J. (2021). Faster computation of g-functions used for modeling of ground heat exchangers with reduced memory consumption. In Proceedings of building simulation 2021: 17th conference of ibpsa. BS 2021. KU Leuven. doi:10.26868/25222708.2021.31086
: Spitler, J., Cook, J., West, T., & Liu, X. (2021). G-function library for modeling vertical bore ground heat exchanger. doi:10.15121/1811518
: Stoltz, K. R., Echeverria, E., Kaphle, A., Austin, A. J., Harikumar, P., Yost, A. J., McIlroy, D. N., & Borunda, M. F. (2021). Optimization of the U parameter in CoO groupings in ZnO (1010) and (1120) surfaces: A DFT+U and UPS study. Computational Materials Science, 198, 110700. doi:10.1016/j.commatsci.2021.110700
: Tabassum, A., Vuppala, R. K., Bai, H., & Kara, K. (2021). Variance reduction of quadcopter trajectory tracking in turbulent wind. IFAC-PapersOnLine, 54(20), 102–107. doi:10.1016/j.ifacol.2021.11.160
: Tasnim, T., Ryan, C., Christensen, M. L., Fennell, C. J., & Pitre, S. P. (2021). Radical perﬂuoroalkylation enabled by a catalytically generated halogen bonding complex and visible light irradiation. Organic Letters. doi:10.1021/acs.orglett.1c04139
: Validi, H., Buchanan, A., & Lykhovyd, E. (2021). Imposing contiguity constraints in political districting models. Operations Research. doi:10.1287/opre.2021.2141
: Vuppala, R. K. S. S. [Rohit K S S] & Kara, K. (2021). A novel approach in realistic wind data generation for the safe operation of small unmanned aerial systems in urban environment. In AIAA AVIATION 2021 FORUM. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2021-2505
: Vuppala, R. K. S. S. [Rohit Kameshwara Sampath Sai] & Kara, K. (2021). Realistic wind data generation for small unmanned air systems in urban environment using convolutional autoencoders. In Aps division of ﬂuid dynamics meeting abstracts (T29.005). APS Meeting Abstracts. Retrieved from https://ui.adsabs.harvard.edu/abs/2021APS..DFDT29005V
: Wang, L. (2021). Experimental and modeling study on the eﬀect of opening location in the under-ventilated compartment ﬁre (Master’s thesis, Oklahoma State University). HDL: 11244/330952
: Wang, R., Miao, Z., Liu, T., Liu, M., Grdinovac, K., Song, X., Liang, Y., Delen, D., & Paiva, W. (2021). Derivation and validation of essential predictors and risk index for early detection of diabetic retinopathy using electronic health records. Journal of Clinical Medicine, 10(7), 1473. doi:10.3390/jcm10071473. PMID: 33918304
: Weber, R. N. (2021). Molecular dynamics simulations of peptide and protein systems (Doctoral dissertation, Colorado State University). HDL: 10217/233854
: Weber, R. & McCullagh, M. (2021). Role of ATP in the RNA translocation mechanism of SARS-CoV-2 NSP13 helicase. 125(31), 8787–8796. doi:10.1021/acs.jpcb.1c04528. PMID: 34328740
: Weekley, S. (2021). Design and analysis of bellwether: A ﬂying wing featuring the bell-shaped spanload (Master’s thesis, Oklahoma State University). HDL: 11244/330953
: Weekley, S. M., Paul, R. C., & Jacob, J. D. (2021). Design and testing of bellwether: A ﬂying wing featuring the bell span-load. In AIAA AVIATION 2021 FORUM. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2021-2438
: Yang, Q., Liu, J., Wang, X., Robinson, K., Whitmore, M. A., Stewart, S. N., Zhao, J., & Zhang, G. (2021). Identiﬁcation of an intestinal microbiota signature associated with the severity of necrotic enteritis. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.703693. PMID: 34489892
: Yi, H., Wang, Q., & Feng, Y. (2021). Computational analysis of obstructive disease and cough intensity eﬀects on the mucus transport and clearance in an idealized upper airway model using the volume of ﬂuid method. Physics of Fluids, 33(2), 021903. doi:10.1063/5.0037764
: Zhao, J. (2021). Unveiling advanced mechanisms of inhalable drug aerosol dynamics using computational ﬂuid dynamics and discrete element method (Doctoral dissertation, Oklahoma State University). HDL: 11244/333784
: Zhao, J., Feng, Y., Koshiyama, K., & Wu, H. (2021). Prediction of airway deformation eﬀect on pulmonary air-particle dynamics: A numerical study. 33(10), 101906. doi:10.1063/5.0065309

2020

: Abele, E., Ray, K., Jacob, J., & Gaeta, R. (2020). Collection device for dolphin hormones in blowhole jet ﬂow ﬁeld. Bulletin of the American Physical Society.
: Agarwal, P. K., Bernard, D. N., Bafna, K., & Doucet, N. (2020). Enzyme dynamics: Looking beyond a single structure. ChemCatChem, 12(19), 4704–4720. doi:10.1002/cctc.202000665. PMID: 33897908
: Alderman, P. D. (2020). A comprehensive R interface for the DSSAT cropping systems model. Computers and Electronics in Agriculture, 172, 105325. doi:10.1016/j.compag.2020.105325
: Alexander, A. S. & Santhanakrishnan, A. (2020). Mechanisms of power augmentation in two side-by-side vertical axis wind turbines. Renewable Energy, 148, 600–610. doi:10.1016/j.renene.2019.10.149
: Banerjee, A. (2020). Investigation into biodegradability of ionic liquids employing active site models (Doctoral dissertation, Oklahoma State University). HDL: 11244/328628
: Banerjee, A. & Shah, J. K. (2020). Elucidating the eﬀect of the ionic liquid type and alkyl chain length on the stability of ionic liquid–iron porphyrin complexes. The Journal of Chemical Physics, 153(3), 034306. doi:10.1063/5.0007815. PMID: 32716177
: Clark, J. M. (2020). Polynomials with small elliptic mahler measure via genetic algorithms (Master’s thesis, Oklahoma State University). HDL: 11244/325521
: Couger, M. B., Graham, C., & Fathepure, B. Z. (2020). Genome sequence of lignin-degrading arthrobacter sp. strain RT-1, isolated from termite gut and rumen ﬂuid. Microbiology Resource Announcements, 9(3). doi:10.1128/mra.01442-19
: Day, J. I. (2020). Fluorination and photocatalysis: New horizons (Doctoral dissertation, Oklahoma State University). HDL: 11244/337482
: Dhakal, K., Kakani, V. G., Ochsner, T. E., & Sharma, S. (2020). Constructing retrospective gridded daily weather data for agro-hydrological applications in oklahoma. Agrosystems, Geosciences & Environment, 3(1). doi:10.1002/agg2.20072
: DiPasquale, M., Francisco, C. A., Mermin, J., & Schweig, J. (2020). Free and non-free multiplicities on the A₃ arrangement. Journal of Algebra, 544, 498–532. doi:10.1016/j.jalgebra.2019.10.029
: Farmanesh, B., Pourhabib, A., Balasundaram, B., & Buchanan, A. (2020). A bayesian framework for functional calibration of expensive computational models through non-isometric matching. IISE Transactions, 53(3), 352–364. doi:10.1080/24725854.2020.1774688
: Fisher, S. J., Alexander, A. S., & Elbing, B. R. (2020). Computational model of ﬂow surrounding brazilian free-tailed bat ear tubercles. In AIAA scitech 2020 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2020-2021
: Fisher, S. J. F. (2020). Computational and experimental investigation of brazilian free-tailed bat ear tubercles on an airfoil leading edge (Master’s thesis, Oklahoma State University). HDL: 11244/325524
: Freire Zapata, V. E. (2020). Eﬀects of subinhibitory doses of the fungicide iprodione on the plant pathogens fusarium oxysporum and f. proliferatum (Master’s thesis, Oklahoma State University). HDL: 11244/335491
: Hoitsma, N. M., Whitaker, A. M., Beckwitt, E. C., Jang, S., Agarwal, P., Van Houten, B., & Freudenthal, B. D. (2020). AP-endonuclease 1 sculpts DNA through an anchoring tyrosine residue on the DNA intercalating loop. Nucleic Acids Research. doi:10.1093/nar/gkaa496. PMID: 32542366
: Huang, C., Liang, Y., Zeng, X., Yang, X., Xu, D., Gou, X., Sathiaseelan, R., Senavirathna, L. K., Wang, P., & Liu, L. (2020). Long noncoding RNA FENDRR exhibits antiﬁbrotic activity in pulmonary ﬁbrosis. American Journal of Respiratory Cell and Molecular Biology, 62(4), 440–453. doi:10.1165/rcmb.2018-0293oc. PMID: 31697569
: Jayaraman, B. & Mamun, S. M. A. A. [S M Abdullah Al]. (2020). On data-driven sparse sensing and linear estimation of ﬂuid ﬂows. Sensors, 20(13), 3752. doi:10.3390/s20133752
: Juenger, J. A. (2020). Reciprocal characteristics of surface waves: Detecting near surface anomalies (Master’s thesis, Oklahoma State University). HDL: 11244/328653
: Kapoor, U. & Shah, J. K. (2020). Macroscopic diﬀerentiators for microscopic structural nonideality in binary ionic liquid mixtures. The Journal of Physical Chemistry B, 124(36), 7849–7856. doi:10.1021/acs.jpcb.0c03740. PMID: 32790368
: Kolewe, E. L., Feng, Y., & Fromen, C. A. (2020). Realizing lobe-speciﬁc aerosol targeting in a 3d-printed in vitro lung model. Journal of Aerosol Medicine and Pulmonary Drug Delivery. doi:10.1089/jamp.2019.1564
: Kumar, P., Agarwal, P. K., & Cuneo, M. J. (2020). On the case of the misplaced hydrogens. ChemBioChem. doi:10.1002/cbic.202000376. PMID: 32706524
: Latiﬁ, R., Minnick, J. L., Quesne, M. G., de Visser, S. P., & Tahsini, L. (2020). Computational studies of DNA base repair mechanisms by nonheme iron dioxygenases: Selective epoxidation and hydroxylation pathways. Dalton Transactions, 49(14), 4266–4276. doi:10.1039/d0dt00007h. PMID: 32141456
: Li, X., Deng, S., Raun, W. R., Wang, Y., & Teng, Y. (2020). Bacterial community in soils following century-long application of organic or inorganic fer tilizers under continuous winter wheat cultivation. Agronomy, 10(10), 1497. doi:10.3390/agronomy10101497
: Mamun, S. M. A. A. [S. M. Abdullah Al]. (2020). Data-driven sparse estimation of nonlinear ﬂuid ﬂows (Master’s thesis, Oklahoma State University). HDL: 11244/325505
: Maulik, R. & San, O. (2020). Numerical assessments of a parametric implicit large eddy simulation model. Journal of Computational and Applied Mathematics, 376, 112866. doi:10.1016/j.cam.2020.112866
: Mi, H., Wang, W., Liu, Y., & Wang, T. (2020). Theoretical evaluation of corrosion inhibition performance of six thiadiazole derivatives. Journal of Theoretical and Computational Chemistry, 19(02), 2050010. doi:10.1142/s0219633620500108
: Miao, Z. & Balasundaram, B. (2020). An ellipsoidal bounding scheme for the quasi-clique number of a graph. INFORMS Journal on Computing, 32(3), 763–778. doi:10.1287/ijoc.2019.0922
: Mosquera-Yuqui, F., Lopez-Guerra, N., & Moncayo-Palacio, E. A. (2020). Targeting the 3clpro and RdRp of SARS-CoV-2 with phytochemicals from medicinal plants of the andean region: Molecular docking and molecular dynamics simulations. Journal of Biomolecular Structure and Dynamics, 1–14. doi:10.1080/07391102.2020.1835716. PMID: 33084512
: Narayanan, C., Bernard, D. N., Létourneau, M., Gagnon, J., Gagné, D., Bafna, K., Calmettes, C., Couture, J.-F., Agarwal, P. K., & Doucet, N. (2020). Insights into structural and dynamical changes experienced by human RNase 6 upon ligand binding. Biochemistry, 59(6), 755–765. doi:10.1021/acs.biochem.9b00888. PMID: 31909602
: Oz, F. & Kara, K. (2020). Eﬀects of local wall cooling on hypersonic boundary-layer stability on a blunt cone. Bulletin of the American Physical Society.
: Payne, D. (2020). Detection of single nucleotide mutations unique to the wisconsin outbreak strains of elizabethkinia anophelis (Master’s thesis, Oklahoma State University). HDL: 11244/335492
: Proaño Cuenca, M. F. (2020). Genomic resources for phylogenetics, population genetics and detection of oomycete plant pathogens (Doctoral dissertation, Oklahoma State University). HDL: 11244/337472
: Puligilla, S. C. & Jayaraman, B. (2020). Assessment of end-to-end and sequential data-driven learning for non-intrusive modeling of ﬂuid ﬂows. Advances in Computational Mathematics, 46(4). doi:10.1007/s10444-020-09753-7
: Rohrer, M. A. (2020). Re-evaluation of the SCO2 and SC seismic reﬂection datasets, eastern south carolina: Implications for tectonic evolution and seismicity (Master’s thesis, Oklahoma State University). HDL: 11244/325538
: Spitler, J., Cook, J., & Liu, X. (2020). Recent experiences calculating g-functions for use in simulation of ground heat exchangers. Geothermal Resources Council Transactions, 44 Clean, Renewable and Always On, 296–315. HDL: 11244/335285. Retrieved from https://publications.mygeoenergynow.org/grc/1034222.pdf
: Spitler, J. D., Cook, J. C., & Liu, X. (2020). A preliminary investigation on the cost reduction potential of optimizing bore ﬁelds for commercial ground source heat pump systems. In Proceedings, 45th workshop on geothermal reservoir engineering. SGP-TR-216. Stanford, California: Stanford University. Retrieved from http://pangea.stanford.edu/ERE/pdf/IGAstandard/SGW/2020/Spitler.pdf
: Straub, S. C. K., Boutte, J., Fishbein, M., & Livshultz, T. (2020). Enabling evolutionary studies at multiple scales in apocynaceae through hyb-seq. Applications in Plant Sciences, 8(11). doi:10.1002/aps3.11400. PMID: 33304663
: Strong, M. D., Hart, M. D., Tang, T. Z., Ojo, B. A., Wu, L., Nacke, M. R., Agidew, W. T., Hwang, H. J., Hoyt, P. R., Bettaieb, A., Clarke, S. L., Smith, B. J., Stoecker, B. J., Lucas, E. A., Lin, D., & Chowanadisai, W. (2020). Role of zinc transporter ZIP12 in susceptibility-weighted brain magnetic resonance imaging (MRI) phenotypes and mitochondrial function. The FASEB Journal. doi:10.1096/fj.202000772r
: Tian, R., Ning, D., He, Z., Zhang, P., Spencer, S. J., Gao, S., Shi, W., Wu, L., Zhang, Y., Yang, Y., Adams, B. G., Rocha, A. M., Detienne, B. L., Lowe, K. A., Joyner, D. C., Klingeman, D. M., Arkin, A. P., Fields, M. W., Hazen, T. C., Stahl, D. A., Alm, E. J., & Zhou, J. (2020). Small and mighty: Adaptation of superphylum patescibacteria to groundwater environment drives their genome simplicity. Microbiome, 8(1). doi:10.1186/s40168-020-00825-w
: Valdivia, A. O., Agarwal, P. K., & Bhattacharya, S. K. (2020). Myelin basic protein phospholipid complexation likely competes with deimination in experimental autoimmune encephalomyelitis mouse model. ACS Omega, 5(25), 15454–15467. doi:10.1021/acsomega.0c01590. PMID: 32637820
: Vuppala, R. K. S. S. & Kara, K. (2020). Large-eddy simulation of atmospheric boundary-layer gusts for small unmanned air systems. In Aps division of ﬂuid dynamics meeting abstracts (H12.007). APS Meeting Abstracts. Retrieved from https://ui.adsabs.harvard.edu/abs/2020APS..DFDH12007V
: Watson, L. E., Siniscalchi, C. M., & Mandel, J. (2020). Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, astereae, calenduleae, gnaphalieae, and senecioneae. Journal of Systematics and Evolution, 58(6), 841–852. doi:10.1111/jse.12698
: Weaver, T. M., Cortez, L. M., Khoang, T. H., Washington, M. T., Agarwal, P. K., & Freudenthal, B. D. (2020). Visualizing rev1 catalyze protein-template DNA synthesis. Proceedings of the National Academy of Sciences, 117(41), 25494–25504. doi:10.1073/pnas.2010484117. PMID: 32999062
: Yadav, A., Vilcáez, J., Farag, I. F., Johnson, B., Mueller, K., Youssef, N. H., & Elshahed, M. S. (2020). Candidatus mcinerneyibacterium aminivorans gen. nov., sp. nov., the ﬁrst representative of the candidate phylum mcinerneyibacteriota phyl. nov. recovered from a high temperature, high salinity tertiary oil reservoir in north central oklahoma, USA. Systematic and Applied Microbiology, 43(2), 126057. doi:10.1016/j.syapm.2020.126057. PMID: 31987701
: Yi, H. (2020). Characterization of large LPG pool ﬁres and mucus clearance dynamics in upper airway using CFD method (Doctoral dissertation, Oklahoma State University). HDL: 11244/329998
: Yi, H., Feng, Y., Park, H., & Wang, Q. (2020). Conﬁguration predictions of large liqueﬁed petroleum gas (LPG) pool ﬁres using CFD method. Journal of Loss Prevention in the Process Industries, 65, 104099. doi:10.1016/j.jlp.2020.104099

2019

: Ahmed, S. E., Rahman, S. M., San, O., Rasheed, A., & Navon, I. M. (2019). Memory embedded non-intrusive reduced order modeling of non-ergodic ﬂows. Physics of Fluids, 31(12), 126602. doi:10.1063/1.5128374
: Akumaga, U. & Alderman, P. D. (2019). Comparison of penman–monteith and priestley-taylor evapotranspiration methods for crop modeling in oklahoma. Agronomy Journal, 111(3), 1171. doi:10.2134/agronj2018.10.0694
: Avery, A. S. [Alyssa S.], Bunting, L., & Jacob, J. D. (2019). Low altitude icing for small unmanned aircraft. In AIAA aviation 2019 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2019-3305
: Avery, A. S. [Alyssa Shearon]. (2019). Ice accretion on small unmanned aircraft (Doctoral dissertation, Oklahoma State University). HDL: 11244/323357
: Ayala Ortiz, C. O. (2019). Comparative genomics of six species of deltocephaline leafhoppers to discover vector competence-related genes (Master’s thesis, Oklahoma State University). HDL: 11244/324818
: Ayalew, S., Confer, A. W., & Couger, M. B. (2019). Genome sequence of a bovine isolate of pasteurella multocida strain 232. Microbiology Resource Announcements, 8(20). doi:10.1128/mra.00333-19. PMID: 31097504
: Banerjee, A. & Shah, J. K. (2019). Insight into conformationally-dependent binding of 1-n-alkyl-3-methylimidazolium cations to porphyrin molecules using quantum mechanical calculations. Physical Chemistry Chemical Physics, 21(19), 10095–10104. doi:10.1039/c9cp01538h
: Basney, J., Welch, V., Brunson, D., Shankar, A., Avila, K., Krenz, M., Del Vento, D., Chourasia, A., Wong, M., Marru, S., et al. (2019). Trusted CI: PEARC19 workshop. HDL: 2142/104693
: Berente, N., Ahalt, S., Bottum, J., Brunson, D., Cutcher-Gershenfeld, J., Howison, J., King, J. L., Neeman, H., Towns, J., Wilkins-Diehr, N., & Winter, S. (2019). The professionalization of cyberinfrastructure personnel? In Proceedings of the practice and experience in advanced research computing on rise of the machines (learning) (87:1–87:6). PEARC ’19. Chicago, IL, USA: ACM. doi:10.1145/3332186.3332225
: Blagden, T., Espindola, A., Cardwell, K., Ortega-Beltran, A., & Bandyopadhyay, R. (2019). Draft genome sequences of three isolates of coniothyrium glycines, causal agent of red leaf blotch of soybean. Microbiology Resource Announcements, 8(40). doi:10.1128/mra.00378-19. PMID: 31582431
: Boutte, J., Fishbein, M., Liston, A., & Straub, S. C. (2019). NGS-indel coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (asclepias). Molecular Phylogenetics and Evolution, 139, 106534. doi:10.1016/j.ympev.2019.106534. PMID: 31212081
: Brazil, M., Brunson, D., Culich, A., DeStefano, L., Jennewein, D., Jolley, T., Middelkoop, T., Neeman, H., Rivera, L., Smith, J., & Wernert, J. (2019). Campus champions: Building and sustaining a thriving community of practice around research computing and data. In Proceedings of the practice and experience in advanced research computing on rise of the machines (learning) (78:1–78:7). PEARC ’19. Chicago, IL, USA: ACM. doi:10.1145/3332186.3332200
: Cosby, T., Kapoor, U., Shah, J. K., & Sangoro, J. (2019). Mesoscale organization and dynamics in binary ionic liquid mixtures. The Journal of Physical Chemistry Letters, 10(20), 6274–6280. doi:10.1021/acs.jpclett.9b02478
: Dai, H. K. (2019). Finding all minimal maximum subsequences in parallel. In Future data and security engineering (pp. 165–184). Springer International Publishing. doi:10.1007/978-3-030-35653-8˙12
: Farmanesh, B. & Pourhabib, A. (2019). Sparse pseudo-input local kriging for large spatial datasets with exogenous variables. IISE Transactions, 1–15. doi:10.1080/24725854.2019.1624926
: Feng, X., Liang, Y., Gallardo, B., & Papeş, M. (2019). Physiology in ecological niche modeling: Using zebra mussel’s upper thermal tolerance to reﬁne model predictions through bayesian analysis. Ecography. doi:10.1111/ecog.04627
: Feng, X., Park, D. S., Liang, Y., Pandey, R., & Papeş, M. (2019). Collinearity in ecological niche modeling: Confusions and challenges. Ecology and Evolution, 9(18), 10365–10376. doi:10.1002/ece3.5555. PMID: 31624555
: Fernandes Junior, F. E. & Yen, G. G. (2019). Particle swarm optimization of deep neural networks architectures for image classiﬁcation. Swarm and Evolutionary Computation, 49, 62–74. doi:10.1016/j.swevo.2019.05.010
: Frazier, A. E., Hemingway, B. L., & Brasher, J. P. (2019). Land surface heterogeneity and tornado occurrence: An analysis of tornado alley and dixie alley. Geomatics, Natural Hazards and Risk, 10(1), 1475–1492. doi:10.1080/19475705.2019.1583292
: Fu, X. (2019). Eﬀects of bacterial roles on the formation of disinfection by-products under metal induction and bioﬁlm response to antibiotics (Doctoral dissertation, Oklahoma State University). HDL: 11244/321523
: Gharibdousti, S. R., Kharel, G., Miller, R. B., Linde, E., & Stoecker, A. (2019). Projected climate could increase water yield and cotton yield but decrease winter wheat and sorghum yield in an agricultural watershed in oklahoma. Water, 11(1), 105. doi:10.3390/w11010105
: Glinton, K., Latiﬁ, R., Cockrell, D. S., Bardeaux, M., Nguyen, B., & Tahsini, L. (2019). Synthesis, characterization, and photoluminescent studies of three-coordinate cu(i)–NHC complexes bearing unsymmetrically-substituted dipyridylamine ligands. RSC Advances, 9(39), 22417–22427. doi:10.1039/c9ra04886c. PMID: 35519490
: Goud, E. M., Sparks, J. P., Fishbein, M., & Agrawal, A. A. (2019). Integrated metabolic strategy: A framework for predicting the evolution of carbon-water tradeoﬀs within plant clades. Journal of Ecology, 107(4), 1633–1644. doi:10.1111/1365-2745.13204
: Haghnegahdar, A., Zhao, J., Kozak, M., Williamson, P., & Feng, Y. (2019). Development of a hybrid CFD-PBPK model to predict the transport of xenon gas around a human respiratory system to systemic regions. Heliyon, 5(4), e01461. doi:10.1016/j.heliyon.2019.e01461. PMID: 31011641
: Hayatifar, A., Borrego, A., Bosek, D., Czarnecki, M., Derocher, G., Kuplicki, A., Lytle, E., Padilla, J., Paroly, C., Tubay, G., Vyletel, J., & Weinert, C. S. (2019). Transition metal-free hydrodeﬂuorination of acid ﬂuorides and organoﬂuorines by Ph₃GeH promoted by catalytic [Ph₃C][B(C₆F₅)₄]. Chemical Communications, 55(73), 10852–10855. doi:10.1039/c9cc05075b
: Huang, C., Liang, Y., Zeng, X., Yang, X., Xu, D., Gou, X., Sathiaseelan, R., Senavirathna, L. K., Wang, P., & Liu, L. (2019). lncRNA FENDRR exhibits anti-ﬁbrotic activity in pulmonary ﬁbrosis. American Journal of Respiratory Cell and Molecular Biology. doi:10.1165/rcmb.2018-0293oc
: Jaiswal, P., Alam, M. I., & Sharma, S. (2019). System and method for recording high-ﬁdelity seismic waveforms. WO/2019/079600. Oklahoma State University. Retrieved from https://patents.google.com/patent/WO2019079600A1/
: Jayaraman, B., Allison, S., & Bai, H. (2019). Estimation of atmospheric boundary layer turbulence structure using modelled small UAS dynamics within LES. In AIAA scitech 2019 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2019-1600
: Jayaraman, B., Lu, C., Whitman, J., & Chowdhary, G. (2019). Sparse feature map-based markov models for nonlinear ﬂuid ﬂows. Computers & Fluids, 191, 104252. doi:10.1016/j.compﬂuid.2019.104252
: Jayaraman, B., Mamun, S. M. A. A., & Lu, C. (2019). Interplay of sensor quantity, placement and system dimension in POD-based sparse reconstruction of ﬂuid ﬂows. Fluids, 4(2), 109. doi:10.3390/ﬂuids4020109
: Jones, K. E., Fér, T., Schmickl, R. E., Dikow, R. B., Funk, V. A., Herrando-Moraira, S., Johnston, P. R., Kilian, N., Siniscalchi, C. M., Susanna, A., Slovák, M., Thapa, R., Watson, L. E., & Mandel, J. R. (2019). An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in asteraceae. Applications in Plant Sciences, 7(10). doi:10.1002/aps3.11295
: Judkins, M. E., Couger, B. M., Warren, W. C., & Van Den Bussche, R. A. (2019). A 50k SNP array reveals genetic structure for bald eagles (haliaeetus leucocephalus). Conservation Genetics. doi:10.1007/s10592-019-01216-x
: Kapoor, U., Banerjee, A., & Shah, J. K. (2019). Evaluation of the predictive capability of ionic liquid force ﬁelds for CH₄, CO₂, NH₃, and SO₂ phase equilibria. Fluid Phase Equilibria, 492, 161–173. doi:10.1016/j.ﬂuid.2019.03.013
: Kapoor, U. & Shah, J. K. (2019). Monte carlo simulations of pure and mixed gas solubilities of CO₂ and CH₄ in nonideal ionic liquid–ionic liquid mixtures. Industrial & Engineering Chemistry Research, 58(50), 22569–22578. doi:10.1021/acs.iecr.9b03384
: Khan, S. (2019). Near wall structure and deviation from equilibrium in wavy channel turbulence (Master’s thesis, Oklahoma State University). HDL: 11244/323408
: Khan, S. & Jayaraman, B. (2019). Statistical structure and deviations from equilibrium in wavy channel turbulence. Fluids, 4(3), 161. doi:10.3390/ﬂuids4030161
: Lim, A., Naidenov, B., Bates, H., Willyerd, K., Snider, T., Couger, M. B., Chen, C., & Ramachandran, A. (2019). Nanopore ultra-long read sequencing technology for antimicrobial resistance detection in mannheimia haemolytica. Journal of Microbiological Methods, 159, 138–147. doi:10.1016/j.mimet.2019.03.001. PMID: 30849421
: Lu, Y. (2019). Finding second-order clubs (Doctoral dissertation, Oklahoma State University). HDL: 11244/323360
: Mandel, J. R., Dikow, R. B., Siniscalchi, C. M., Thapa, R., Watson, L. E., & Funk, V. A. (2019). A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversiﬁcations throughout the history of asteraceae. Proceedings of the National Academy of Sciences, 116(28), 14083–14088. doi:10.1073/pnas.1903871116
: Mashayekhi, M. (2019). Studies of heat shock protein A9 (HSPA9/Mortalin/Grp75) substrate binding domain and anticancer ﬂex-hets interactions using nuclear magnetic resonance and molecular mechanics tools (Doctoral dissertation, Oklahoma State University). HDL: 11244/321552
: Maulik, R., San, O., Jacob, J. D., & Crick, C. (2019). Sub-grid scale model classiﬁcation and blending through deep learning. Journal of Fluid Mechanics, 870, 784–812. doi:10.1017/jfm.2019.254
: Mitchell, M. S. (2019). An enhanced vertical ground heat exchanger model for whole-building energy simulation (Doctoral dissertation, Oklahoma State University). HDL: 11244/323367
: Mitchell, M. S. & Spitler, J. D. (2019). Characterization, testing, and optimization of load aggregation methods for ground heat exchanger response-factor models. Science and Technology for the Built Environment, 25(8), 1036–1051. doi:10.1080/23744731.2019.1648936
: Moen, D. S. (2019). What determines the distinct morphology of species with a particular ecology? the roles of many-to-one mapping and trade-oﬀs in the evolution of frog ecomorphology and performance. The American Naturalist, 194(4), E81–E95. doi:10.1086/704736. PMID: 31490721
: More, S., Zhu, Z., Lin, K., Huang, C., Pushparaj, S., Liang, Y., Sathiaseelan, R., Yang, X., & Liu, L. (2019). Long non-coding RNA PSMB8-AS1 regulates inﬂuenza virus replication. RNA Biology, 16(3), 340–353. doi:10.1080/15476286.2019.1572448
: Murphy, C. L., Youssef, N. H., Hanafy, R. A., Couger, M. B., Stajich, J. E., Wang, Y., Baker, K., Dagar, S. S., Griﬃth, G. W., Farag, I. F., Callaghan, T. M., & Elshahed, M. S. (2019). Horizontal gene transfer as an indispensable driver for evolution of neocallimastigomycota into a distinct gut-dwelling fungal lineage. Applied and Environmental Microbiology, 85(15). doi:10.1128/aem.00988-19. PMID: 31126947
: Mylkes, D. L., Chang, E. S., Chang, S. A., Durica, D. S., Tomanek, L., Ventura, T., & Zhou, W. (2019). Signaling pathways controlling phase transitions in the crustacean molting gland. In The crustacean society mid-year meeting 2019: Abstract booklet (p. 88). HDL: 2117/187481
: Naidenov, B., Lim, A., Willyerd, K., Torres, N. J., Johnson, W. L., Hwang, H. J., Hoyt, P., Gustafson, J. E., & Chen, C. (2019). Pan-genomic and polymorphic driven prediction of antibiotic resistance in elizabethkingia. Frontiers in Microbiology, 10. doi:10.3389/fmicb.2019.01446. PMID: 31333599
: Narayanan, S., Bates, H., Confer, A., Couger, B., & Ramachandran, A. (2019). Whole-genome sequence of multidrug-resistant bibersteinia trehalosi strain OADDL-BT1. Microbiology Resource Announcements, 8(6). doi:10.1128/mra.01690-18
: Neeman, H., Al-Azzawi, H. M., Brunson, D., Burke, W., Colbry, D., Falgout, J. T., Ferguson, J. W., Gesing, S., Gyllinsky, J., Simmons, C. S., Simms, J. L., Tanash, M., Voss, D., Wells, J., & Yockel, S. (2019). Cultivating the cyberinfrastructure workforce via an intermediate/advanced virtual residency workshop. In Proceedings of the practice and experience in advanced research computing on rise of the machines (learning) (79:1–79:8). PEARC ’19. Chicago, IL, USA: ACM. doi:10.1145/3332186.3332204
: Niyibizi, B. (2019). Spatial smoothing of corn yield trends and robustness of the impact of climate change on us corn yields (Doctoral dissertation, Oklahoma State University). HDL: 11244/323371
: Ochsner, T. E., Linde, E., Haﬀner, M., & Dong, J. (2019). Mesoscale soil moisture patterns revealed using a sparse in situ network and regression kriging. Water Resources Research, 55(6), 4785–4800. doi:10.1029/2018wr024535
: Pawar, S., Rahman, S. M., Vaddireddy, H., San, O., Rasheed, A., & Vedula, P. (2019). A deep learning enabler for nonintrusive reduced order modeling of ﬂuid ﬂows. Physics of Fluids, 31(8), 085101. doi:10.1063/1.5113494
: Pourhabib, A. (2019). Empirical similarity for absent data generation in imbalanced classiﬁcation. In Lecture notes in networks and systems (pp. 1010–1030). Springer International Publishing. doi:10.1007/978-3-030-12388-8˙70
: Rahman, S. M. [Sk. M.], Ahmed, S. E., & San, O. (2019). A dynamic closure modeling framework for model order reduction of geophysical ﬂows. Physics of Fluids, 31(4), 046602. doi:10.1063/1.5093355
: Rahman, S. M. [Sk. Mashﬁqur] & San, O. (2019). A relaxation ﬁltering approach for two-dimensional rayleigh–taylor instability-induced ﬂows. Fluids, 4(2), 78. doi:10.3390/ﬂuids4020078
: Rosenfeld, J. A., Russo, B., Kamalapurkar, R., & Johnson, T. T. (2019). The occupation kernel method for nonlinear system identiﬁcation. doi:10.48550/ARXIV.1909.11792
: Sharp, G. M. (2019). Evaluation and optimization of bioinformatic tools for the detection of human foodborne pathogens in complex metagenomic datasets (Doctoral dissertation, Oklahoma State University). HDL: 11244/323446
: Shukla, K. (2019). Seismic wave propagation, attenuation and scattering in porous media across various scales (Doctoral dissertation, Oklahoma State University). HDL: 11244/324877
: Sun, S., Miao, Z., Ratcliﬀe, B., Campbell, P., Pasch, B., El-Kassaby, Y. A., Balasundaram, B., & Chen, C. (2019). SNP variable selection by generalized graph domination. PLOS ONE, 14(1), e0203242. doi:10.1371/journal.pone.0203242. PMID: 30677030
: Sun, T. (2019). Models and methods of quantitative single-ﬁber reﬂectance spectroscopy of tissue properties (Doctoral dissertation, Oklahoma State University). HDL: 11244/324880
: Sun, T. & Piao, D. (2019a). An integration model of steady-state single-ﬁber diﬀuse reﬂectance. In S. Fantini, P. Taroni, B. J. Tromberg, & E. M. Sevick-Muraca (Eds.), Optical tomography and spectroscopy of tissue XIII. SPIE. doi:10.1117/12.2509942
: Sun, T. & Piao, D. (2019b). Simple analytical total diﬀuse reﬂectance over a reduced-scattering-pathlength scaled dimension of [10^-5, 10^-1] from a medium with HG scattering anisotropy. Applied Optics, 58(33), 9279. doi:10.1364/ao.58.009279
: Wang, Y., Youssef, N. H., Couger, M. B., Hanafy, R. A., Elshahed, M. S., & Stajich, J. E. (2019). Molecular dating of the emergence of anaerobic rumen fungi and the impact of laterally acquired genes. mSystems, 4(4). doi:10.1128/msystems.00247-19. PMID: 31455637
: Weitemier, K., Straub, S. C., Fishbein, M., Bailey, C. D., Cronn, R. C., & Liston, A. (2019). A draft genome and transcriptome of common milkweed (asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and apocynaceae. PeerJ, 7, e7649. doi:10.7717/peerj.7649
: Willson, D., Monleon, V., & Weiskittel, A. (2019). Quantiﬁcation and incorporation of uncertainty in forest growth and yield projections using a bayesian probabilistic framework: A demonstration for plantation coastal douglas-ﬁr in the paciﬁc northwest, usa. Mathematical and Computational Forestry & Natural-Resource Sciences (MCFNS), 11(2), 264–285(22). Retrieved from http://mcfns.net/index.php/Journal/article/view/11.3
: Wilson, T. (2019). Investigation of low-proﬁle vortex generators via computational methods (Master’s thesis, Oklahoma State University). HDL: 11244/323435
: Wilson, T. C., KC, R., Lucido, N. A., Elbing, B. R., Alexander, A. S., Jacob, J. D., Ireland, P., & Black, J. A. (2019). Computational investigation of the conformal vortex generator. In AIAA scitech 2019 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2019-2138
: Xiao, B. (2019). Boussinesq equations with partial or fractional dissipation (Doctoral dissertation, Oklahoma State University). HDL: 11244/321588
: Yi, H., Feng, Y., & Wang, Q. (2019). Computational ﬂuid dynamics (CFD) study of heat radiation from large liqueﬁed petroleum gas (LPG) pool ﬁres. Journal of Loss Prevention in the Process Industries, 61, 262–274. doi:10.1016/j.jlp.2019.06.015
: Youssef, N. H., Farag, I. F., Hahn, C. R., Jarett, J., Becraft, E., Eloe-Fadrosh, E., Lightfoot, J., Bourgeois, A., Cole, T., Ferrante, S., Truelock, M., Marsh, W., Jamaleddine, M., Ricketts, S., Simpson, R., McFadden, A., Hoﬀ, W., Ravin, N. V., Sievert, S., Stepanauskas, R., Woyke, T., & Elshahed, M. (2019). Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities. Applied and Environmental Microbiology, 85(10). doi:10.1128/aem.00110-19
: Youssef, N. H., Farag, I. F., Hahn, C. R., Premathilake, H., Fry, E., Hart, M., Huﬀaker, K., Bird, E., Hambright, J., Hoﬀ, W. D., & Elshahed, M. S. (2019). Candidatus krumholzibacterium zodletonense gen. nov., sp nov, the ﬁrst representative of the candidate phylum krumholzibacteriota phyl. nov. recovered from an anoxic sulﬁdic spring using genome resolved metagenomics. Systematic and Applied Microbiology, 42(1), 85–93. doi:10.1016/j.syapm.2018.11.002
: Youssef, N. H., Farag, I. F., Rudy, S., Mulliner, A., Walker, K., Caldwell, F., Miller, M., Hoﬀ, W., & Elshahed, M. (2019). The wood–ljungdahl pathway as a key component of metabolic versatility in candidate phylum bipolaricaulota (acetothermia, OP1). Environmental Microbiology Reports. doi:10.1111/1758-2229.12753

2018

: Ahmed, M. & San, O. [Omer]. (2018). Stabilized principal interval decomposition method for model reduction of nonlinear convective systems with moving shocks. Computational and Applied Mathematics, 37(5), 6870–6902. doi:10.1007/s40314-018-0718-z
: Akosa, J. S. (2018). Uniﬁed approach to false discovery rate control under dependence that incorporates null distribution and shrinkage estimation (Doctoral dissertation, Oklahoma State University). HDL: 20.500.14446/337476
: Alexander, A. (2018). Fluid dynamic mechanisms of power augmentation in vertical axis wind turbines (Doctoral dissertation, Oklahoma State University). HDL: 11244/317601
: Allison, S., Bai, H., & Jayaraman, B. (2018). Modeling trajectory performance of quadrotors under wind disturbances. In 2018 AIAA information systems-AIAA infotech @ aerospace. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2018-1237
: Alotaibi, F. S. (2018). Changes in gene expression under water stress in the ﬂag leaf and seed head during the grain-ﬁlling stage of two spring wheat cultivars (Doctoral dissertation, Oklahoma State University). HDL: 11244/319632
: Alotaibi, M. A. (2018). Molecular and physiological indicators of drought stress in soft white spring wheat at the vegetative stage development (Doctoral dissertation, Oklahoma State University). HDL: 11244/317734
: Anderson, M. (2018). A lab-made method for extracting DNA from soils. Soil Research, 56(6), 560. doi:10.1071/sr17261
: Aneke, M. C. (2018). Seismic characterization of a glaciated multi-layered aquifer system in central illinois (Master’s thesis, Oklahoma State University). HDL: 11244/319624
: Appelhans, M. S., Wen, J., Duretto, M., Crayn, D., & Wagner, W. L. (2018). Historical biogeography ofMelicope(rutaceae) and its close relatives with a special emphasis on paciﬁc dispersals. Journal of Systematics and Evolution, 56(6), 576–599. doi:10.1111/jse.12299
: Bertrand, D. & McPherson, R. A. (2018). Future hydrologic extremes of the red river basin. Journal of Applied Meteorology and Climatology, 57(6), 1321–1336. doi:10.1175/jamc-d-17-0346.1
: Calkins, S. S., Elledge, N. C., Mueller, K. E., Marek, S. M., Couger, M., Elshahed, M. S., & Youssef, N. H. (2018). Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus pecoramyces ruminantium strain c1a. PeerJ, 6, e4276. doi:10.7717/peerj.4276. PMID: 29404209
: Cao, X. & Jiang, H. (2018). Building a platform for predicting functions of serine protease-related proteins in drosophila melanogaster and other insects. Insect Biochemistry and Molecular Biology, 103, 53–69. doi:10.1016/j.ibmb.2018.10.006. PMID: 30367934
: Chandran, P. (2018). Novel molecular simulation approach to liquid-liquid equilibria and application to the design of desalination solvents (Master’s thesis, Oklahoma State University). HDL: 11244/317818
: Chandran, P. & Shah, J. K. (2018). A molecular simulation approach to the computation of mutual solubility of water and organic liquids: Application to fatty acids. Fluid Phase Equilibria, 472, 48–55. doi:10.1016/j.ﬂuid.2018.05.002
: Chen, X., Feng, Y., Zhong, W., Sun, B., & Tao, F. (2018). Numerical investigation of particle deposition in a triple bifurcation airway due to gravitational sedimentation and inertial impaction. Powder Technology, 323, 284–293. doi:10.1016/j.powtec.2017.09.050
: Couger, B., Weirick, T., Damásio, A. R. L., Segato, F., Polizeli, M. D. L. T. D. M., de Almeida, R. S. C., Goldman, G. H., & Prade, R. A. (2018). The genome of a thermo tolerant, pathogenic albino aspergillus fumigatus. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.01827
: Couger, M. B., Arévalo, L., & Campbell, P. (2018). A high quality genome for mus spicilegus, a close relative of house mice with unique social and ecological adaptations. G3: GENES, GENOMES, GENETICS, 8(7), 2145–2152. doi:10.1534/g3.118.200318. PMID: 29794166
: Curtis, J. T., Assefa, S., Francis, A., & Köhler, G. A. (2018). Fecal microbiota in the female prairie vole (microtus ochrogaster). PLOS ONE, 13(3), e0190648. doi:10.1371/journal.pone.0190648. PMID: 29579049
: Das, S., Vraspir, L., Zhou, W., Durica, D. S., & Mykles, D. L. (2018). Transcriptomic analysis of diﬀerentially expressed genes in the molting gland (y-organ) of the blackback land crab, gecarcinus lateralis, during molt-cycle stage transitions. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 28, 37–53. doi:10.1016/j.cbd.2018.06.001. PMID: 29940393
: Day, J. I., Singh, K., Trinh, W., & Weaver, J. D. (2018). Visible light mediated generation of trans-arylcyclohexenes and their utilization in the synthesis of cyclic bridged ethers. Journal of the American Chemical Society, 140(31), 9934–9941. doi:10.1021/jacs.8b04642. PMID: 30001489
: DeSilva, C. (2018). Calculating band structures for organic semiconductors (Bachelor’s Thesis, Oklahoma State University). HDL: 11244/317124
: Dhakal, K., Kakani, V. G., & Linde, E. (2018). Climate change impact on wheat production in the southern great plains of the US using downscaled climate data. Atmospheric and Climate Sciences, 08(02), 143–162. doi:10.4236/acs.2018.82011
: Dick, R. P., Dick, L. K., Deng, S., Li, X., Kandeler, E., Poll, C., Freeman, C., Jones, T. G., Weintraub, M. N., Esseili, K. A., & Saxena, J. (2018). Cross-laboratory comparison of ﬂuorimetric microplate and colorimetric bench-scale soil enzyme assays. Soil Biology and Biochemistry, 121, 240–248. doi:10.1016/j.soilbio.2017.12.020
: DiPasquale, M., Francisco, C. A., Mermin, J., Schweig, J., & Sosa, G. (2018). The rees algebra of a two-borel ideal is koszul. Proceedings of the American Mathematical Society, 147(2), 467–479. doi:10.1090/proc/13966
: Espindola, A. S., Schneider, W., Cardwell, K. F., Carrillo, Y., Hoyt, P. R., Marek, S. M., Melouk, H. A., & Garzon, C. D. (2018). Inferring the presence of aﬂatoxin-producing aspergillus ﬂavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool. PLOS ONE, 13(10), e0198575. doi:10.1371/journal.pone.0198575. PMID: 30325975
: Feng, Y. (2018). Create the individualized digital twin for noninvasive precise pulmonary healthcare. Signiﬁcances of Bioengineering & Biosciences, 1(2). doi:10.31031/sbb.2018.01.000507
: Feng, Y., Chen, X., & Yang, M. (2018). An in silico investigation of a lobe-speciﬁc targeted pulmonary drug delivery method. In 2018 design of medical devices conference. ASME. doi:10.1115/dmd2018-6928
: Feng, Y., Zhao, J., Kleinstreuer, C., Wang, Q., Wang, J., Wu, D. H., & Lin, J. (2018). An in silico inter-subject variability study of extra-thoracic morphology eﬀects on inhaled particle transport and deposition. Journal of Aerosol Science, 123, 185–207. doi:10.1016/j.jaerosci.2018.05.010
: Fennell, C. J., Ghousifam, N., Haseleu, J. M., & Gappa-Fahlenkamp, H. (2018). Computational signaling protein dynamics and geometric mass relations in biomolecular diﬀusion. The Journal of Physical Chemistry B, 122(21), 5599–5609. doi:10.1021/acs.jpcb.7b11846. PMID: 29510047
: Fetkovich, E. J. (2018). Shear-wave reﬂection imaging of glacial-deposit aquifers in northern illinois (Master’s thesis, Oklahoma State University). HDL: 11244/319628
: Fishbein, M., Livshultz, T., Straub, S. C. K., Simões, A. O., Boutte, J., McDonnell, A., & Foote, A. (2018). Evolution on the backbone: Apocynaceae phylogenomics and new perspectives on growth forms, ﬂowers, and fruits. American Journal of Botany, 105(3), 495–513. doi:10.1002/ajb2.1067. PMID: 29733432
: Fishbein, M., Straub, S. C. K., Boutte, J., Hansen, K., Cronn, R. C., & Liston, A. (2018). Evolution at the tips: Asclepias phylogenomics and new perspectives on leaf surfaces. American Journal of Botany, 105(3), 514–524. doi:10.1002/ajb2.1062. PMID: 29693728
: Grachet, N. G., Couger, M., Young, C., Hartson, S., Garzon, C., Marek, S., & Walker, N. (2018). The genomes of ophiosphaerella spp. reveal new insights into the bermudagrass spring dead spot pathosystem. In Phytopathology (Vol. 108, 10, pp. 111–112). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.
: Guruacharya, A. (2018). Panama: A tool for ion channel biophysics simulation. doi:10.1101/202051
: Haghnegahdar, A. (2018). Development of a multiscale numerical model with two human pulmonary health applications (Master’s thesis, Oklahoma State University). HDL: 11244/320959
: Haghnegahdar, A., Feng, Y., Chen, X., & Lin, J. (2018). Computational analysis of deposition and translocation of inhaled nicotine and acrolein in the human body with e-cigarette puﬃng topographies. Aerosol Science and Technology, 52(5), 483–493. doi:10.1080/02786826.2018.1447644. PMID: 30381781
: Hayatifar, A., Shumaker, F. A., Komanduri, S. P., Hallenbeck, S. A., Rheingold, A. L., & Weinert, C. S. (2018). Synthesis of the elusive branched ﬂuoro-oligogermane (Ph₃Ge)₃GeF: A structural, spectroscopic, electrochemical, and computational study. Organometallics, 37(12), 1852–1859. doi:10.1021/acs.organomet.8b00095
: Hu, L., Ma, L. M., Zheng, S., He, X., Hammack, T. S., Brown, E. W., & Zhang, G. (2018). Development of a novel loop-mediated isothermal ampliﬁcation (LAMP) assay for the detection of salmonella ser. enteritidis from egg products. Food Control, 88, 190–197. doi:10.1016/j.foodcont.2018.01.006
: Kaphle, A., Borunda, M. F., & Hari, P. (2018). Inﬂuence of cobalt doping on residual stress in ZnO nanorods. Materials Science in Semiconductor Processing, 84, 131–137. doi:10.1016/j.mssp.2018.05.019
: Kapoor, U. (2018). Ionic liquids: The importance of local structures at micro- and mesoscale and descriptors to tune them (Doctoral dissertation, Oklahoma State University). HDL: 11244/320939
: Kapoor, U. & Shah, J. K. (2018a). Eﬀect of molecular solvents of varying polarity on the self-assembly of 1-n-dodecyl-3-methylimidazolium octylsulfate ionic liquid. Journal of Theoretical and Computational Chemistry, 17(03), 1840004. doi:10.1142/s0219633618400047
: Kapoor, U. & Shah, J. K. (2018b). Molecular origins of the apparent ideal CO₂ solubilities in binary ionic liquid mixtures. The Journal of Physical Chemistry B, 122(42), 9763–9774. doi:10.1021/acs.jpcb.8b08223. PMID: 30281297
: Kapoor, U. & Shah, J. K. (2018c). Thermophysical properties of imidazolium-based binary ionic liquid mixtures using molecular dynamics simulations. Journal of Chemical & Engineering Data, 63(7), 2512–2521. doi:10.1021/acs.jced.7b01028
: Kottke, T., Xie, A., Larsen, D. S., & Hoﬀ, W. D. (2018). Photoreceptors take charge: Emerging principles for light sensing. Annual Review of Biophysics, 47(1), 291–313. doi:10.1146/annurev-biophys-070317-033047
: Kröger, C., MacKenzie, K. D., Alshabib, E. Y., Kirzinger, M. W., Suchan, D. M., Chao, T.-C., Akulova, V., Miranda-CasoLuengo, A. A., Monzon, V. A., Conway, T., Sivasankaran, S. K., Hinton, J. C., Hokamp, K., & Cameron, A. (2018). The primary transcriptome, small RNAs and regulation of antimicrobial resistance in acinetobacter baumannii ATCC 17978. Nucleic Acids Research, 46(18), 9684–9698. doi:10.1093/nar/gky603
: Liang, Y., Li, Y., & Zhang, B. (2018). Bayesian nonparametric inference for panel count data with an informative observation process. Biometrical Journal, 60(3), 583–596. doi:10.1002/bimj.201700176. PMID: 29468723
: Lim, A., Naidenov, B., Bates, H., Willyerd, K., Snider, T., Couger, M. B., Chen, C., & Ramachandran, A. (2018). Genomic surveillance for antimicrobial resistance in mannheimia haemolytica using nanopore single molecule sequencing technology. doi:10.1101/395087
: Lu, Y., Moradi, E., & Balasundaram, B. (2018). Correction to: Finding a maximum k-club using the k-clique formulation and canonical hypercube cuts. Optimization Letters, 12(8), 1959–1969. doi:10.1007/s11590-018-1273-7
: Ma, J. & Balasundaram, B. (2018). On the chance-constrained minimum spanning k-core problem. Journal of Global Optimization. doi:10.1007/s10898-018-0714-2
: Mamun, S. A., Lu, C., & Jayaraman, B. (2018). Extreme learning machines as encoders for sparse reconstruction. Fluids, 3(4), 88. doi:10.3390/ﬂuids3040088
: Materer, N. F., Apblett, A., Kadossov, E. B., Bussan, D., Bobo, M., Kupgan, G., & Dyer, D. (2018). Experimental and computation studies of the reaction of hydrogen peroxide and methyl hydroperoxide on molybdenum hydrogen bronze surfaces. Topics in Catalysis, 61(9-11), 1183–1192. doi:10.1007/s11244-018-0942-1
: Maulik, R. [R.], San, O. [O.], & Behera, R. (2018). An adaptive multilevel wavelet framework for scale-selective WENO reconstruction schemes. International Journal for Numerical Methods in Fluids, 87(5), 239–269. doi:10.1002/ﬂd.4489
: Maulik, R. [R.], San, O. [O.], Rasheed, A. [A.], & Vedula, P. (2018a). Data-driven deconvolution for large eddy simulations of kraichnan turbulence. Physics of Fluids, 30(12), 125109. doi:10.1063/1.5079582
: Maulik, R. [R.], San, O. [O.], Rasheed, A. [A.], & Vedula, P. (2018b). Subgrid modelling for two-dimensional turbulence using neural networks. Journal of Fluid Mechanics, 858, 122–144. doi:10.1017/jfm.2018.770
: Maulik, R. [Romit] & San, O. [Omer]. (2018a). A dynamic closure modeling framework for large eddy simulation using approximate deconvolution: Burgers equation. Cogent Physics, 5(1). doi:10.1080/23311940.2018.1464368
: Maulik, R. [Romit] & San, O. [Omer]. (2018b). Explicit and implicit LES closures for burgers turbulence. Journal of Computational and Applied Mathematics, 327, 12–40. doi:10.1016/j.cam.2017.06.003
: Maulik, R. [Romit], San, O., & Bach, C. K. (2018). A computational investigation of the eﬀect of ground clearance in vertical ducting systems - ashrae r-1743. In International high performance building conference, paper 308. Retrieved from https://docs.lib.purdue.edu/ihpbc/308
: McDonnell, A., Parks, M., & Fishbein, M. (2018). Multilocus phylogenetics of new world milkweed vines (apocynaceae, asclepiadoideae, gonolobinae). Systematic Botany, 43(1), 77–96. doi:10.1600/036364418x697021
: Neeman, H., Kalyvaki, M., Mizumoto, C., Park, J., Schwartz, A. Z., Simms, J. L., Vania, R., Al-Azzawi, H. M., Bergstrom, A., Braiterman, Z. K., Brunson, D., Colbry, D., Colmenares, E., Fuller, A. N., & Gesing, S. (2018). Progress update on the development and implementation of the advanced cyberinfrastructure research & education facilitators virtual residency program. In Proceedings of the practice and experience on advanced research computing - PEARC ’18. ACM Press. doi:10.1145/3219104.3219117
: Ollerton, J., Liede-Schumann, S., Endress, M. E., Meve, U., Rech, A. R., Shuttleworth, A., Keller, H. A., Fishbein, M., Alvarado-Cárdenas, L. O., Amorim, F. W., Bernhardt, P., Celep, F., Chirango, Y., Chiriboga-Arroyo, F., Civeyrel, L., Cocucci, A., Cranmer, L., da Silva-Batista, I. C., de Jager, L., Deprá, M. S., Domingos-Melo, A., Dvorsky, C., Agostini, K., Freitas, L., Gaglianone, M. C., Galetto, L., Gilbert, M., González-Ramı́rez, I., Gorostiague, P., Goyder, D., Hachuy-Filho, L., Heiduk, A., Howard, A., Ionta, G., Islas-Hernández, S. C., Johnson, S. D., Joubert, L., Kaiser-Bunbury, C. N., Kephart, S., Kidyoo, A., Koptur, S., Koschnitzke, C., Lamborn, E., Livshultz, T., Machado, I. C., Marino, S., Mema, L., Mochizuki, K., Morellato, L. P. C., Mrisha, C. K., Muiruri, E. W., Nakahama, N., Nascimento, V. T., Nuttman, C., Oliveira, P. E., Peter, C. I., Punekar, S., Raﬀerty, N., Rapini, A., Ren, Z.-X., Rodrı́guez-Flores, C. I., Rosero, L., Sakai, S., Sazima, M., Steenhuisen, S.-L., Tan, C.-W., Torres, C., Trøjelsgaard, K., Ushimaru, A., Vieira, M. F., Wiemer, A. P., Yamashiro, T., Nadia, T., Queiroz, J., & Quirino, Z. (2018). The diversity and evolution of pollination systems in large plant clades: Apocynaceae as a case study. Annals of Botany, 123(2), 311–325. doi:10.1093/aob/mcy127
: Pleinert, M.-O., von Zanthier, J., & Agarwal, G. S. (2018). Phase control of the quantum statistics of collective emission. Physical Review A, 97(2). doi:10.1103/physreva.97.023831
: Qiao, H., Feng, X., Escobar, L. E., Peterson, A. T., Soberón, J., Zhu, G., & Papeş, M. (2018). An evaluation of transferability of ecological niche models. Ecography, 42(3), 521–534. doi:10.1111/ecog.03986
: Rahman, S., Rasheed, A. [Adil], & San, O. (2018). A hybrid analytics paradigm combining physics-based modeling and data-driven modeling to accelerate incompressible ﬂow solvers. Fluids, 3(3), 50. doi:10.3390/ﬂuids3030050
: Rahman, S., San, O. [Omer], & Rasheed, A. (2018). A hybrid approach for model order reduction of barotropic quasi-geostrophic turbulence. Fluids, 3(4), 86. doi:10.3390/ﬂuids3040086
: San, O. [Omer] & Maulik, R. [Romit]. (2018a). Extreme learning machine for reduced order modeling of turbulent geophysical ﬂows. Physical Review E, 97(4). doi:10.1103/physreve.97.042322. PMID: 29758628
: San, O. [Omer] & Maulik, R. [Romit]. (2018b). Machine learning closures for model order reduction of thermal ﬂuids. Applied Mathematical Modelling, 60, 681–710. doi:10.1016/j.apm.2018.03.037
: San, O. [Omer] & Maulik, R. [Romit]. (2018c). Neural network closures for nonlinear model order reduction. Advances in Computational Mathematics, 44(6), 1717–1750. doi:10.1007/s10444-018-9590-z
: San, O. [Omer] & Maulik, R. [Romit]. (2018d). Stratiﬁed kelvin–helmholtz turbulence of compressible shear ﬂows. Nonlinear Processes in Geophysics, 25(2), 457–476. doi:10.5194/npg-25-457-2018
: Scholtz, R., Archer, S. R., Fuhlendorf, S. D., Buitenwerf, R., Tanner, E. P., & Polo, J. A. (2018). Woody plant dynamics in fragmented landscapes of the great plains, usa. In 2018 esa annual meeting (august 5–10). ESA.
: Scholtz, R., Polo, J. A., Fuhlendorf, S. D., Engle, D. M., & Weir, J. R. (2018). Woody plant encroachment mitigated diﬀerentially by ﬁre and herbicide. Rangeland Ecology & Management, 71(2), 239–244. doi:10.1016/j.rama.2017.10.001
: Shyamal, S., Das, S., Guruacharya, A., Mykles, D. L., & Durica, D. S. (2018). Transcriptomic analysis of crustacean molting gland (y-organ) regulation via the mTOR signaling pathway. Scientiﬁc Reports, 8(1). doi:10.1038/s41598-018-25368-x. PMID: 29743490
: Singh, K., Fennell, C. J., Coutsias, E. A., Latiﬁ, R., Hartson, S., & Weaver, J. D. (2018). Light harvesting for rapid and selective reactions: Click chemistry with strain-loadable alkenes. Chem, 4(1), 124–137. doi:10.1016/j.chempr.2017.11.007
: Smith, G. H. (2018). Exploring critical conformations: State searching and sampling in both germanium chains and ice (Master’s thesis, Oklahoma State University). HDL: 11244/321000
: Stone, C. L., Frederick, R. D., Tooley, P. W., Luster, D. G., Campos, B., Winegar, R. A., Melcher, U., Fletcher, J., & Blagden, T. (2018). Annotation and analysis of the mitochondrial genome of coniothyrium glycines, causal agent of red leaf blotch of soybean, reveals an abundance of homing endonucleases. PLOS ONE, 13(11), e0207062. doi:10.1371/journal.pone.0207062
: Tang, Z., Fan, F., Wang, X., Shi, X., Deng, S., & Wang, D. (2018). Mercury in rice ( oryza sativa l. ) and rice-paddy soils under long-term fertilizer and organic amendment. Ecotoxicology and Environmental Safety, 150, 116–122. doi:10.1016/j.ecoenv.2017.12.021
: Timmons, C., Pai, K., Jacob, J., Zhang, G., & Ma, L. M. (2018). Inactivation of salmonella enterica, shiga toxin-producing escherichia coli, and listeria monocytogenes by a novel surface discharge cold plasma design. Food Control, 84, 455–462. doi:10.1016/j.foodcont.2017.09.007
: Wang, B., Park, H., Xu, K., & Wang, Q. (2018). Prediction of lower ﬂammability limits of blended gases based on quantitative structure–property relationship. Journal of Thermal Analysis and Calorimetry, 132(2), 1125–1130. doi:10.1007/s10973-017-6941-9
: Wang, B., Xu, K., & Wang, Q. (2018). Prediction of upper ﬂammability limits for fuel mixtures using quantitative structure–property relationship models. Chemical Engineering Communications, 206(2), 247–253. doi:10.1080/00986445.2018.1483350
: Wijayasekara, D., Hoyt, P., Gimondo, A., Dunn, B., Thapa, A., Jones, H., & Verchot, J. (2018). Molecular characterization of two badnavirus genomes associated with canna yellow mottle disease. Virus Research, 243, 19–24. doi:10.1016/j.virusres.2017.10.001

2017

: Akin, D., Liu, F. C., Maji, A., Neeman, H., Reynolds, R., Sherman, A. H., Showerman, M., Tillotson, J., Towns, J., Turner, G., Zimmerman, B., Belgin, M., Bouvet, T. A., Bright, N. C., Harrell, S., Haymore, B., Jennings, M., Knepper, R., & LaPine, D. (2017). Linux clusters institute workshops. In Proceedings of the HPC systems professionals workshop on - HPCSYSPROS’17. ACM Press. doi:10.1145/3155105.3155108
: Alam, M. I. & Jaiswal, P. (2017). Near surface characterization using VP/VSand poisson’s ratio from seismic refractions. Journal of Environmental & Engineering Geophysics, 22(2), 101–109. doi:10.2113/jeeg22.2.101
: Alderman, P. D. & Stanﬁll, B. (2017). Quantifying model-structure- and parameter-driven uncertainties in spring wheat phenology prediction with bayesian analysis. European Journal of Agronomy, 88, 1–9. doi:10.1016/j.eja.2016.09.016
: Alexander, A. S. & Santhanakrishnan, A. (2017). Trapped cylindrical ﬂow with multiple inlets for savonius vertical axis wind turbines. Journal of Fluids Engineering, 140(4), 044501. doi:10.1115/1.4038166
: Almutairi, M. M. R. (2017). Genetic diversity among hard red winter wheat cultivars and experimental lines and their association with water limitation (Doctoral dissertation, Oklahoma State University). HDL: 11244/300066
: Alpas, H., Yeni, F., Soyer, Y., & Fletcher, J. (2017). Recent outbreaks of human pathogens on plants (hpops) on fresh produce – lessons learned from the practice. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙4
: Andreason, S. A., Arif, M., Brown, J. K., Ochoa-Corona, F., Fletcher, J., & Wayadande, A. (2017). Single-target and multiplex discrimination of whiteﬂies (hemiptera: Aleyrodidae) bemisia tabaci and trialeurodes vaporariorum with modiﬁed priming oligonucleotide thermodynamics. Journal of Economic Entomology, 110(4), 1821–1830. doi:10.1093/jee/tox125
: Avery, A. S. & Jacob, J. D. (2017). Evaluation of low altitude icing conditions for small unmanned aircraft. In 9th AIAA atmospheric and space environments conference. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2017-3929
: Ayalew, S., Confer, A. W., Hansen, R. D., & Couger, M. B. (2017a). Genome sequence of a spontaneous nonhemolytic mutant of mannheimia haemolytica 16041065 GH. Genome Announcements, 5(14). doi:10.1128/genomea.01720-16
: Ayalew, S., Confer, A. W., Hansen, R. D., & Couger, M. B. (2017b). Genome sequence of mannheimia haemolytica serotype 1 strain 16041065 BH. Genome Announcements, 5(14). doi:10.1128/genomea.01721-16
: Ayalew, S., Confer, A. W., Hartson, S. D., Canaan, P. J., Payton, M., & Couger, B. (2017). Proteomic and bioinformatic analyses of putative mannheimia haemolytica secretome by liquid chromatography and tandem mass spectrometry. Veterinary Microbiology, 203, 73–80. doi:10.1016/j.vetmic.2017.02.011
: Babu, B., Washburn, B. K., Ertek, T. S., Miller, S. H., Riddle, C. B., Knox, G. W., Ochoa-Corona, F. M., Olson, J., Katırcıoğlu, Y. Z., & Paret, M. L. (2017). A ﬁeld based detection method for rose rosette virus using isothermal probe-based reverse transcription-recombinase polymerase ampliﬁcation assay. Journal of Virological Methods, 247, 81–90. doi:10.1016/j.jviromet.2017.05.019
: Babu, K. S., Bajc, B., & Saad, S. (2017). Yukawa sector of minimal SO(10) uniﬁcation. Journal of High Energy Physics, 2017(2). doi:10.1007/jhep02(2017)136
: Babu, K. S., Khanov, A., & Saad, S. (2017). Anarchy with hierarchy: A probabilistic appraisal. Physical Review D, 95(5). doi:10.1103/physrevd.95.055014
: Bertrand, D. (2017). Exploring future hydrologic extremes of the red river basin (Master’s thesis, University of Oklahoma). HDL: 11244/51914
: Brini, E., Fennell, C. J., Fernandez-Serra, M., Hribar-Lee, B., Lukšič, M., & Dill, K. A. (2017). How water’s properties are encoded in its molecular structure and energies. Chemical Reviews, 117(19), 12385–12414. doi:10.1021/acs.chemrev.7b00259
: Bryant, D. M., Johnson, K., DiTommaso, T., Tickle, T., Couger, M. B., Payzin-Dogru, D., Lee, T. J., Leigh, N. D., Kuo, T.-H., Davis, F. G., Bateman, J., Bryant, S., Guzikowski, A. R., Tsai, S. L., Coyne, S., Ye, W. W., Freeman, R. M., Peshkin, L., Tabin, C. J., Regev, A., Haas, B. J., & Whited, J. L. (2017). A tissue-mapped axolotl de novo transcriptome enables identiﬁcation of limb regeneration factors. Cell Reports, 18(3), 762–776. doi:10.1016/j.celrep.2016.12.063
: Cao, X., Gulati, M., & Jiang, H. (2017). Serine protease-related proteins in the malaria mosquito, anopheles gambiae. Insect Biochemistry and Molecular Biology, 88, 48–62. doi:10.1016/j.ibmb.2017.07.008
: Cao, X. & Jiang, H. (2017). An analysis of 67 RNA-seq datasets from various tissues at diﬀerent stages of a model insect, manduca sexta. BMC Genomics, 18(1). doi:10.1186/s12864-017-4147-y
: Cho, J., Grogg, K., Min, C. H., Zhu, X., Paganetti, H., Lee, H. C., & Fakhri, G. E. (2017). Feasibility study of using fall-oﬀ gradients of early and late PET scans for proton range veriﬁcation. Medical Physics, 44(5), 1734–1746. doi:10.1002/mp.12191
: Chuba, D., Goyder, D., Chase, M. W., & Fishbein, M. (2017). Phylogenetics of the african asclepias complex (apocynaceae) based on three plastid DNA regions. Systematic Botany, 42(1), 148–159. doi:10.1600/036364417x694539
: Dai, S. (2017). Density functional theory and time-dependent dft modeling of organic photovoltaic materials (Doctoral dissertation, Oklahoma State University). HDL: 11244/300088
: Davis, T. (2017). Parallelization of the clark, colbourn, and johnson maximum clique algorithm for unit disk graphs (Doctoral dissertation, Oklahoma State University).
: Day, J. I. & Weaver, J. D. (2017). Selective and scalable perﬂuoroarylation of nitroalkanes. The Journal of Organic Chemistry, 82(13), 6801–6810. doi:10.1021/acs.joc.7b00962
: Deng, S., Dick, R., Freeman, C., Kandeler, E., & Weintraub, M. N. (2017). Comparison and standardization of soil enzyme assay for meaningful data interpretation. Journal of Microbiological Methods, 133, 32–34. doi:10.1016/j.mimet.2016.12.013
: Dhakal, K. [K.], Linde, E., Kakani, V. G., Alderman, P. D., Brunson, D., Ochsner, T. E., & Carver, B. (2017). Impact of Climate Change on Potential, Attainable, and Actual Wheat Yield in Oklahoma. AGU Fall Meeting Abstracts. Retrieved from http://adsabs.harvard.edu/abs/2017AGUFMGC41D1041D
: Dhakal, K. [Kundan]. (2017). Spatially explicit modeling of switchgrass and wheat in oklahoma (Doctoral dissertation, Oklahoma State University).
: Doust, A. N., Mauro-Herrera, M., Hodge, J. G., & Stromski, J. (2017). The c4 model grass setaria is a short day plant with secondary long day genetic regulation. Frontiers in Plant Science, 8. doi:10.3389/fpls.2017.01062
: Ebrahimi, P. & Jaiswal, P. (2017). Directional ﬁlter aided sub-basalt interpretation: A case study from the faroe-shetland basin. Journal of Applied Geophysics, 137, 82–91. doi:10.1016/j.jappgeo.2016.12.004
: Farag, I. F. [Ibrahim F.], Youssef, N. H., & Elshahed, M. S. (2017). Global distribution patterns and pangenomic diversity of the candidate phylum “latescibacteria” (WS3). Applied and Environmental Microbiology, 83(10). doi:10.1128/aem.00521-17
: Farag, I. F. [Ibrahim Farouk]. (2017). Exploring the habitat distribution, metabolic diversities and potential ecological roles of candidate phyla “aminicenantes”(op8) and “latescibacteria”(ws3) (Doctoral dissertation, Oklahoma State University). HDL: 11244/300056
: Feng, X., Castro, M. C., Linde, E., & Papeş, M. (2017). Armadillo mapper. Tropical Conservation Science, 10, 194008291772413. doi:10.1177/1940082917724133
: Feng, X. & Papeş, M. (2017). Can incomplete knowledge of species’ physiology facilitate ecological niche modelling? a case study with virtual species. Diversity and Distributions, 23(10), 1157–1168. doi:10.1111/ddi.12606
: Feng, Y. (2017). A new patient-speciﬁc pulmonary drug targeted delivery method to treat lung cancer using e-cigarette technology. In Proceedings of the AIChE 2017 annual meeting.
: Feng, Y., Chen, X., Xu, Z., & Haghnegahdar, A. (2017). Intersubject variability in pulmonary drug delivery eﬃciency to target lung tumors at diﬀerent lobes: An in-silico study. In Proceedings of the biomedical engineering society 2017 annual meeting.
: Feng, Y. & Haghnegahdar, A. (2017). A new pulmonary drug targeted delivery method for lung diseases treatment: An in-silico study. In Proceedings of the oklahoma center for respiratory and infectious diseases 4th annual retreat.
: Feng, Y., Haghnegahdar, A., & Chen, X. (2017). A computational multiphase ﬂow model to predict the transport and deposition of inhaled ﬂu virus-laden droplets in human respiratory tracts for early infection diagnosis. In Proceedings of the AIChE 2017 annual meeting.
: Feng, Y., Wang, J. [Jun], & Chen, X. (2017). Noninvasive diagnostics for the early detection of lower respiratory diseases: An in-silico study. In Proceedings of the AIChE 2017 annual meeting.
: Feng, Y., Wang, J. [Jun], Haghnegahdar, A., & Bezerra, M. (2017). Numerical investigation of occupational-related metal aerosol transmission and deposition patterns in a virtual human respiratory system. In Proceedings of the american association for aerosol research 2017 annual conference. Retrieved from http://aaarabstracts.com/2017/AbstractBook.pdf
: Feng, Y., Zhao, J., Chen, X., & Lin, J. (2017). An in silico subject-variability study of upper airway morphological inﬂuence on the airﬂow regime in a tracheobronchial tree. Bioengineering, 4(4), 90. doi:10.3390/bioengineering4040090
: Fletcher, J., Gamliel, A., Stack, J. P., Dehne, H. W., Isack, Y., & Moncrief, I. (2017). Applications and assessment of microbial forensics in a ﬁeld outbreak of salmon blotch of onion in israel. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙13
: Foster, C. (2017). A computational approach for accessing phosphorylated response regulator conformations and signaling complexes involving the fungal phosphorelay protein ypd1 (Doctoral dissertation, University of Oklahoma). HDL: 11244/44926
: Francisco, C. A., Mermin, J., & Schweig, J. (2017). Boij-söderberg and veronese decompositions. Journal of Commutative Algebra, 9(3), 367–386. doi:10.1216/jca-2017-9-3-367
: Frazier, A., Hemingway, B., & Brasher, J. (2017). Land surface heterogeneity and tornado formation: A comparison of tornado alley and dixie alley. Journal of Climatology & Weather Forecasting, 05(02). doi:10.4172/2332-2594.1000203
: Ge, X., Deng, S., Zhu, L., Li, Y., Jia, Z., Tian, Y., & Tang, L. (2017). Response of nitrogen mineralization dynamics and biochemical properties to litter amendments to soils of a poplar plantation. Journal of Forestry Research, 29(4), 915–924. doi:10.1007/s11676-017-0523-3
: Gehan, M. A., Fahlgren, N., Abbasi, A., Berry, J. C., Callen, S. T., Chavez, L., Doust, A. N., Feldman, M. J., Gilbert, K. B., Hodge, J. G., Hoyer, J. S., Lin, A., Liu, S., Lizárraga, C., Lorence, A., Miller, M., Platon, E., Tessman, M., & Sax, T. (2017). PlantCV v2: Image analysis software for high-throughput plant phenotyping. PeerJ, 5, e4088. doi:10.7717/peerj.4088
: Haghnegahdar, A. & Feng, Y. (2017a). Development of a multiscale cfpd-pbtk model for lung deposition and whole-body translocation of inhaled nicotine and acrolein in e-cigarette aerosols. In Proceedings of the 2017 american society for engineering education midwest section conference.
: Haghnegahdar, A. & Feng, Y. (2017b). The translocation of nicotine from human lung to systemic regions due to e-cigarette aerosol inhalation: A numerical study. In Cmbe proceedings (pp. 1096–1099). Retrieved from https://www.compbiomed.net/2017/cmbe-proceedings.htm
: Harris, A., Chen, P.-T., Xu, X.-W., Zhang, J.-Q., Yang, X., & Wen, J. (2017). A molecular phylogeny of staphyleaceae: Implications for generic delimitation and classical biogeographic disjunctions in the family. Journal of Systematics and Evolution, 55(2), 124–141. doi:10.1111/jse.12236
: Harris, A., Dee, J., & Palmer, M. W. (2017). The eﬀects of taxonomic rank on climatic calibrations: A test using extant ﬂoras of united states counties. Review of Palaeobotany and Palynology, 244, 316–324. doi:10.1016/j.revpalbo.2017.02.002
: He, X., Cao, X., He, Y., Bhattarai, K., Rogers, J., Hartson, S., & Jiang, H. (2017). Hemolymph proteins of anopheles gambiae larvae infected by escherichia coli. Developmental & Comparative Immunology, 74, 110–124. doi:10.1016/j.dci.2017.04.009
: Hendershot, M. E. & Liang, Y. (2017). Estimating judicial accomplishment: Applying the legislative accomplishment strategy to the decisions of the supreme court. Justice System Journal, 38(3), 256–276. doi:10.1080/0098261x.2017.1296386
: Ismail, A. [A.], Abdelnaby, A., & Larson, T. (2017). High-resolution p- and s-wave seismic reﬂection followed by engineering modeling for geotechnical site characterization in southern illinois. Journal of Environmental and Engineering Geophysics, 22(4), 375–384. doi:10.2113/JEEG22.4.375
: Ismail, A. [Ahmed], Thomason, J., & Atekwana, E. (2017). Shear-wave seismic reﬂection for improved detection of ground subsidence and scouring features. In International conference on engineering geophysics, al ain, united arab emirates, 9-12 october 2017. Society of Exploration Geophysicists. doi:10.1190/iceg2017-002
: Jackson, C., Couger, M., Prabhakaran, M., Ramachandriya, K., Canaan, P., & Fathepure, B. (2017). Isolation and characterization of Rhizobium sp. strain YS-1r that degrades lignin in plant biomass. Journal of Applied Microbiology, 122(4), 940–952. doi:10.1111/jam.13401
: Jaiswal, P., Gregg, J. M., Parks, S., Holman, R., Mohammadi, S., & Grammer, G. M. (2017). Evidence of fault/fracture ”hydrothermal” reservoirs in the southern midcontinent mississippian carbonates. Mississippian Reservoirs of the Midcontinent: AAPG memoir, 116.
: Jaiswal, P., Holman, R., & Grammer, M. (2017). Pitfalls in three-dimensional seismic interpretation: Footprints of an irregular source–receiver layout. AAPG Bulletin, 101(11), 1747–1758. doi:10.1306/02071716056
: Judkins, M. E. (2017). Conservation genomics of north american bald (haliaeetus leucocephalus) and golden (aquila chrysaetos) eagles (Doctoral dissertation, Oklahoma State University). HDL: 11244/300060
: Kapoor, U. & Shah, J. K. (2017). Globular, sponge-like to layer-like morphological transition in 1-n-alkyl-3-methylimidazolium octylsulfate ionic liquid homologous series. The Journal of Physical Chemistry B, 122(1), 213–228. doi:10.1021/acs.jpcb.7b08397. PMID: 29202582
: Kibble, G. A. [Geoﬀrey A.], Jacob, J. D., Alexander, A., Elbing, B. R., Ireland, P., & Black, B. (2017). Aerodynamic investigation of the conformal vortex generator. In 47th AIAA ﬂuid dynamics conference. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2017-3117
: Kibble, G. A. [Geoﬀrey Alexander]. (2017). Experimental and computational investigation of the conformal vortex generator (Master’s thesis, Oklahoma State University). HDL: 11244/300000
: Kozak, M. & Feng, Y. (2017). Non-newtonian ﬂuid ﬂow patterns in a customized parallel plate ﬂow chamber: An in-silico study using a computational ﬂuid dynamics model. In Proceedings of the 2017 american society for engineering education midwest section conference.
: Liu, M., Lei, L., Miao, F., Powers, C., Zhang, X., Deng, J., Tadege, M., Carver, B. F., & Yan, L. (2017). The STENOFOLIA gene from medicago alters leaf width, ﬂowering time and chlorophyll content in transgenic wheat. Plant Biotechnology Journal, 16(1), 186–196. doi:10.1111/pbi.12759
: Lu, C. (2017). Sparse data-driven modeling framework for nonlinear ﬂuid ﬂows (Doctoral dissertation, Oklahoma State University).
: Lu, C. & Jayaraman, B. (2017). Data-driven modeling for nonlinear ﬂuid ﬂows. In 23rd AIAA computational ﬂuid dynamics conference. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2017-3628
: Ma, L. M., Fletcher, J., Mumford, J. D., Holt, J., & Leach, A. W. (2017). Decision tool for assessing the likelihood of an intentional foodborne illness outbreak. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙9
: Mandelli, F., Couger, M. B., Paixão, D. A. A., Machado, C. B., Carnielli, C. M., Aricetti, J. A., Polikarpov, I., Prade, R., Caldana, C., Leme, A. F. P., Mercadante, A. Z., Riaño-Pachón, D. M., & Squina, F. M. (2017). Thermal adaptation strategies of the extremophile bacterium thermus ﬁliformis based on multi-omics analysis. Extremophiles, 21(4), 775–788. doi:10.1007/s00792-017-0942-2
: Maulik, R. [R.] & San, O. [O.]. (2017). A dynamic framework for functional parameterisations of the eddy viscosity coeﬃcient in two-dimensional turbulence. International Journal of Computational Fluid Dynamics, 31(2), 69–92. doi:10.1080/10618562.2017.1287902
: Maulik, R. [Romit] & San, O. [Omer]. (2017a). A dynamic subgrid-scale modeling framework for boussinesq turbulence. International Journal of Heat and Mass Transfer, 108, 1656–1675. doi:10.1016/j.ijheatmasstransfer.2017.01.028
: Maulik, R. [Romit] & San, O. [Omer]. (2017b). A novel dynamic framework for subgrid scale parametrization of mesoscale eddies in quasigeostrophic turbulent ﬂows. Computers and Mathematics with Applications, 74(3), 420–445. doi:10.1016/j.camwa.2017.04.016
: Maulik, R. [Romit] & San, O. [Omer]. (2017c). A stable and scale-aware dynamic modeling framework for subgrid-scale parameterizations of two-dimensional turbulence. Computers & Fluids, 158, 11–38. doi:10.1016/j.compﬂuid.2016.11.015
: Maulik, R. [Romit] & San, O. [Omer]. (2017d). Resolution and energy dissipation characteristics of implicit LES and explicit ﬁltering models for compressible turbulence. Fluids, 2(2), 14. doi:10.3390/ﬂuids2020014
: McDonnell, A. (2017). Phylogeny and evolution of new world milkweed vines (apocynaceae,gonolobianae) and the resurrection of chthamalia (Doctoral dissertation, Oklahoma State University).
: Melstrom, R. T. (2017a). The petroleum industry’s response to an endangered species listing. In Proceedings of the aaea 2017 annual meeting. Agricultural and Applied Economics Association. doi:10.22004/ag.econ.258281
: Melstrom, R. T. (2017b). Where to drill? the petroleum industry’s response to an endangered species listing. Energy Economics, 66, 320–327. doi:10.1016/j.eneco.2017.06.028
: Miao, Z. & Balasundaram, B. (2017). Approaches for ﬁnding cohesive subgroups in large-scale social networks via maximum k -plex detection. Networks, 69(4), 388–407. doi:10.1002/net.21745
: Moktan Tamang, H. B. (2017). Structure and dynamics studies of membrane and non-membrane proteins using nmr and md simulations (Doctoral dissertation, Oklahoma State University). HDL: 11244/300065
: Moktan, H. & Zhou, D. H. (2017). Wing 1 of protein HOP2 is as important as helix 3 in DNA binding by MD simulation. Journal of Biomolecular Structure and Dynamics, 36(7), 1853–1866. doi:10.1080/07391102.2017.1333458. PMID: 28531371
: Morrison, J. M., Baker, K. D., Zamor, R. M., Nikolai, S., Elshahed, M. S., & Youssef, N. H. (2017). Spatiotemporal analysis of microbial community dynamics during seasonal stratiﬁcation events in a freshwater lake (grand lake, OK, USA). PLOS ONE, 12(5), e0177488. doi:10.1371/journal.pone.0177488
: Morrison, J. M., Murphy, C. L., Baker, K., Zamor, R. M., Nikolai, S. J., Wilder, S., Elshahed, M. S., & Youssef, N. H. (2017). Microbial communities mediating algal detritus turnover under anaerobic conditions. PeerJ, 5, e2803. doi:10.7717/peerj.2803
: Mumford, J. D., Gullino, M. L., Stack, J. P., Fletcher, J., & Quinlan, M. M. (2017). The need for international perspectives to solve global biosecurity challenges. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙18
: Ni, J., Dadras, S., Lam, W. K., Shrestha, R. K., Sadgrove, M., Wimberger, S., & Summy, G. S. (2017). Hamiltonian ratchets with ultra-cold atoms. Annalen der Physik, 529(8), 1600335. doi:10.1002/andp.201600335
: Pan, X., Richardson, M. D., Deng, S., Kremer, R. J., English, J. T., Mihail, J. D., Sams, C. E., Scharf, P. C., Veum, K. S., & Xiong, X. (2017). Eﬀect of organic amendment and cultural practice on large patch occurrence and soil microbial community. Crop Science, 57(4), 2263. doi:10.2135/cropsci2016.09.0809
: Passow, C. N., Brown, A. P., Arias-Rodriguez, L., Yee, M.-C., Sockell, A., Schartl, M., Warren, W. C., Bustamante, C., Kelley, J. L., & Tobler, M. (2017). Complexities of gene expression patterns in natural populations of an extremophile ﬁsh (poecilia mexicana , poeciliidae). Molecular Ecology, 26(16), 4211–4225. doi:10.1111/mec.14198
: Passow, C. N., Henpita, C., Shaw, J. H., Quackenbush, C. R., Warren, W. C., Schartl, M., Arias-Rodriguez, L., Kelley, J. L., & Tobler, M. (2017). The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile ﬁsh. Molecular Ecology, 26(22), 6384–6399. doi:10.1111/mec.14360
: Pleinert, M.-O., von Zanthier, J., & Agarwal, G. S. (2017). Hyperradiance from collective behavior of coherently driven atoms. Optica, 4(7), 779. doi:10.1364/optica.4.000779
: Qiao, L., Zou, C. B., Gaitán, C. F., Hong, Y., & McPherson, R. A. (2017). Analysis of precipitation projections over the climate gradient of the arkansas red river basin. Journal of Applied Meteorology and Climatology, 56(5), 1325–1336. doi:10.1175/jamc-d-16-0201.1
: Qiao, L., Zou, C. B., Stebler, E., & Will, R. E. (2017). Woody plant encroachment reduces annual runoﬀ and shifts runoﬀ mechanisms in the tallgrass prairie, USA. Water Resources Research, 53(6), 4838–4849. doi:10.1002/2016wr019951
: Ratcliﬀe, B., El-Dien, O. G., Cappa, E. P., Porth, I., Klápště, J., Chen, C., & El-Kassaby, Y. A. (2017). Single-step BLUP with varying genotyping eﬀort in open-pollinated picea glauca. G3: GENES, GENOMICS, GENETICS, 7(3), 935–942. doi:10.1534/g3.116.037895
: Rydzak, P., Ochoa Corona, F., Whitﬁeld, A. E., & Wayadande, A. C. (2017). Detection and diﬀerentiation of arthropod-transmitted viruses of cereal crops using multiplex pcr and high resolution melting. In Abstracts of presentations at the 2017 APS annual meeting (Vol. 107, 12S, S5.1–S5.142). Scientiﬁc Societies. doi:10.1094/phyto-107-12-s5.1
: Saha, S., Hosmani, P. S., Villalobos-Ayala, K., Miller, S., Shippy, T., Flores, M., Rosendale, A., Cordola, C., Bell, T., Mann, H., DeAvila, G., DeAvila, D., Moore, Z., Buller, K., Ciolkevich, K., Nandyal, S., Mahoney, R., Voorhis, J. V., Dunlevy, M., Farrow, D., Hunter, D., Morgan, T., Shore, K., Guzman, V., Izsak, A., Dixon, D. E., Cridge, A., Cano, L., Cao, X., Jiang, H., Leng, N., Johnson, S., Cantarel, B. L., Richards, S., English, A., Shatters, R. G., Childers, C., Chen, M.-J., Hunter, W., Cilia, M., Mueller, L. A., Munoz-Torres, M., Nelson, D., Poelchau, M. F., Benoit, J. B., Wiersma-Koch, H., D’Elia, T., & Brown, S. J. (2017). Improved annotation of the insect vector of citrus greening disease: Biocuration by a diverse genomics community. Database, 2017. doi:10.1093/database/bax032
: Salinas Villacís, K. V., Espitia-Navarro, H., Garcia-Suarez, J., & Ochoa Corona, F. (2017). Introducing primerchecker, a pcr primer performance graphic display generator. In Abstracts of presentations at the 2017 APS annual meeting (Vol. 107, 12S, S5.1–S5.142). Scientiﬁc Societies. doi:10.1094/phyto-107-12-s5.1
: San, O. [Omer] & Vedula, P. (2017). Generalized deconvolution procedure for structural modeling of turbulence. Journal of Scientiﬁc Computing, 75(2), 1187–1206. doi:10.1007/s10915-017-0583-8
: Sandoval Pineda, J. F., Ochoa Corona, F., & Torres Rojas, E. (2017). Evaluacion de diferentes metodos de extraccion de ARN a partir del hongo nativo xylaria sp. Revista Colombiana de Biotecnologia, 19(1), 42–52. doi:10.15446/rev.colomb.biote.v19n1.57114
: Scholtz, R., Polo, J., Fuhlendorf, S., & Duckworth, G. (2017). Land cover dynamics inﬂuence distribution of breeding birds in the great plains, USA. Biological Conservation, 209, 323–331. doi:10.1016/j.biocon.2017.02.028
: Schukei, R. (2017). Study of ensemble learning with AdaBoost and NEAT (Doctoral dissertation, Oklahoma State University). HDL: 11244/300070
: Shah, J. K., Marin-Rimoldi, E., Mullen, R. G., Keene, B. P., Khan, S., Paluch, A. S., Rai, N., Romanielo, L. L., Rosch, T. W., Yoo, B., & Maginn, E. J. (2017). Cassandra: An open source monte carlo package for molecular simulation. Journal of Computational Chemistry, 38(19), 1727–1739. doi:10.1002/jcc.24807
: SHARMA, R. (2017). On the numerical solutions of 2d boussinesq equations with fractional dissipation. Neural, Parallel, and Scientiﬁc Computations, 25, 497–507. Retrieved from http://www.dynamicpublishers.com/Neural/NPSC2017/P16.497-508_SharmaR.pdf
: Shukla, K. & Jaiswal, P. (2017). Waveﬁeld-based regularization of multicomponent seismic data. In Seg technical program expanded abstracts 2017 (pp. 2575–2579). doi:10.1190/segam2017-17794904.1
: Shukla, K., Jaiswal, P., Carcione, J., & Santos, J. (2017). Eﬀect of capillary pressure on seismic velocities. In SEG technical program expanded abstracts 2017. Society of Exploration Geophysicists. doi:10.1190/segam2017-17751776.1
: Smith, P. M. & Borunda, M. F. (2017). Torsional potential energy surfaces of dinitrobenzene isomers. Advances in Condensed Matter Physics, 2017, 1–7. doi:10.1155/2017/3296845
: Song, J., Carver, B. F., Powers, C., Yan, L., Klápště, J., El-Kassaby, Y. A., & Chen, C. (2017). Practical application of genomic selection in a doubled-haploid winter wheat breeding program. Molecular Breeding, 37(10). doi:10.1007/s11032-017-0715-8
: Thistlethwaite, F. R., Ratcliﬀe, B., Klápště, J., Porth, I., Chen, C., Stoehr, M. U., & El-Kassaby, Y. A. (2017). Genomic prediction accuracies in space and time for height and wood density of douglas-ﬁr using exome capture as the genotyping platform. BMC Genomics, 18(1). doi:10.1186/s12864-017-4258-5
: Van Den Bussche, R. A., Judkins, M. E., Montague, M. J., & Warren, W. C. (2017). A resource of genome-wide single nucleotide polymorphisms (snps) for the conservation and management of golden eagles. Journal of Raptor Research, 51(3), 368–377. doi:10.3356/jrr-16-47.1
: Wang, B., Zhou, L., Xu, K., & Wang, Q. (2017). Fast prediction of minimum ignition energy from molecular structure using simple QSPR model. Journal of Loss Prevention in the Process Industries, 50, 290–294. doi:10.1016/j.jlp.2017.10.010
: Wang, J. [Jiliang], Wu, S., Geng, J., & Jaiswal, P. (2017). Acoustic wave attenuation in the gas hydrate-bearing sediments of well GC955h, gulf of mexico. Marine Geophysical Research, 39(4), 509–522. doi:10.1007/s11001-017-9336-1
: Williamson, C. H. [Casey H]. (2017). Computational studies of 2d diﬀusion and water nucleation (Master’s thesis, Oklahoma State University). HDL: 11244/317713
: Williamson, C. H. [Casey H.], Hall, J. R., & Fennell, C. J. (2017). Two-dimensional molecular simulations using rose potentials. Journal of Molecular Liquids, 228, 11–18. doi:10.1016/j.molliq.2016.10.016
: Yeh, K., Monagin, C., & Fletcher, J. (2017). Promoting scientiﬁc transparency to facilitate the safe and open international exchange of biological materials and electronic data. Tropical Medicine and Infectious Disease, 2(4), 57. doi:10.3390/tropicalmed2040057

2016

: Alam, M. D. I. (2016). Near-surface characterization using p- and s-wave tomography (Doctoral dissertation, Oklahoma State University). HDL: 11244/54470
: Andreason, S., Schneider, W., & Wayadande, A. (2016). Detection of plant pathogens within insect vector transcriptome sequencing datasets. In Proceedings of the 2016 annual meeting of the entomological society of america southwestern branch. Retrieved from https://www.entsoc.org/PDF/2016/2016_Southwest_Branch_Program_Book.pdf
: Avramov, A. P., Couger, M., Hartley, E. L., Land, C., Wellendorf, R., Hanafy, R. A., Budd, C., French, D. P., Hoﬀ, W. D., & Youssef, N. (2016). Draft genome sequence of microbacterium oleivorans strain wellendorf implicates heterotrophic versatility and bioremediation potential. Genomics Data, 10, 54–60. doi:10.1016/j.gdata.2016.09.005
: Babu, B., Jeyaprakash, A., Jones, D., Schubert, T. S., Baker, C., Washburn, B. K., Miller, S. H., Poduch, K., Knox, G. W., Ochoa-Corona, F. M., & Paret, M. L. (2016). Development of a rapid, sensitive TaqMan real-time RT-PCR assay for the detection of rose rosette virus using multiple gene targets. Journal of Virological Methods, 235, 41–50. doi:10.1016/j.jviromet.2016.05.010
: Babu, K., Bajc, B., & Saad, S. (2016). New class of SO(10) models for ﬂavor. Physical Review D, 94(1). doi:10.1103/physrevd.94.015030
: Behafarid, F., Brasseur, J. G., Vijayakumar, G., Jayaraman, B., & Wang, Y. (2016). Computational Studies of Drug Release, Transport and Absorption in the Human Intestines. In Aps meeting abstracts (A20.004). Retrieved from http://adsabs.harvard.edu/abs/2016APS..DFDA20004B
: BLAGDEN, T., SCHNEIDER, W., MELCHER, U., DANIELS, J., & FLETCHER, J. (2016). Adaptation and validation of e-probe diagnostic nucleic acid analysis for detection of escherichia coli O157:H7 in metagenomic data from complex food matrices. Journal of Food Protection, 79(4), 574–581. doi:10.4315/0362-028x.jfp-15-440
: Brini, E., Paranahewage, S., Fennell, C., & Dill, K. (2016). Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the sampl5 molecules. Journal of Computer-Aided Molecular Design, 30(11), 1067–1077. doi:10.1007/s10822-016-9961-9
: Buchanan, J. W., Reecy, J. M., Garrick, D. J., Duan, Q., Beitz, D. C., Koltes, J. E., Saatchi, M., Koesterke, L., & Mateescu, R. G. (2016). Deriving gene networks from SNP associated with triacylglycerol and phospholipid fatty acid fractions from ribeyes of angus cattle. Frontiers in Genetics, 7. doi:10.3389/fgene.2016.00116
: Calkins, S., Couger, M., Jackson, C., Zandler, J., Hudgins, G. C., Hanafy, R. A., Budd, C., French, D. P., Hoﬀ, W. D., & Youssef, N. (2016). Draft genome sequence of staphylococcus hominis strain hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. Genomics Data, 10, 91–96. doi:10.1016/j.gdata.2016.10.003
: Calkins, S. & Youssef, N. H. (2016). Insights into the utility of the focal adhesion scaﬀolding proteins in the anaerobic fungus orpinomyces sp. c1a. PLOS ONE, 11(9), e0163553. doi:10.1371/journal.pone.0163553
: Cao, X. (2016). Rna-seq assisted gene modeling and annotation, transcriptome study and functional analysis of stress responsive peptides of manduca sexta (Doctoral dissertation, Oklahoma State University). HDL: 11244/300277
: Cho, J., Campbell, P., Wang, M., Alqathami, M., Mawlawi, O., Kerr, M., & Cho, S. H. (2016). Feasibility of hydrogel ﬁducial markers forin vivoproton range veriﬁcation using PET. Physics in Medicine and Biology, 61(5), 2162–2176. doi:10.1088/0031-9155/61/5/2162
: Cho, J., Gonzalez-Lepera, C., Manohar, N., Kerr, M., Krishnan, S., & Cho, S. H. (2016). Quantitative investigation of physical factors contributing to gold nanoparticle-mediated proton dose enhancement. Physics in Medicine and Biology, 61(6), 2562–2581. doi:10.1088/0031-9155/61/6/2562
: Cho, J., Ibbott, G. S., Kerr, M. D., Amos, R. A., Stingo, F. C., Marom, E. M., Truong, M. T., Palacio, D. M., Betancourt, S. L., Erasmus, J. J., DeGroot, P. M., Carter, B. W., Gladish, G. W., Sabloﬀ, B. S., Benveniste, M. F., Godoy, M. C., Patil, S., Sorensen, J., & Mawlawi, O. R. (2016). Characterizing proton-activated materials to develop PET-mediated proton range veriﬁcation markers. Physics in Medicine and Biology, 61(11), N291–N310. doi:10.1088/0031-9155/61/11/n291
: Cho, J., Wang, M., Gonzalez-Lepera, C., Mawlawi, O., & Cho, S. H. (2016). Development of bimetallic (zn@au) nanoparticles as potential PET-imageable radiosensitizers. Medical Physics, 43(8Part1), 4775–4788. doi:10.1118/1.4958961
: Couger, M. [M.B.], Wright, A., Lutter, E., & Youssef, N. (2016). Draft genome sequences of ﬁve pseudomonas aeruginosa clinical strains isolated from sputum samples from cystic ﬁbrosis patients. Genome Announcements, 4(1). doi:10.1128/genomea.01528-15
: Couger, M., Fletcher, J., & Schneider, W. (2016). Harnessing wgs for forensic analysis: Bioinformatics pipelines and data. In Abstracts of special session presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.164–S4.183). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.164
: Al-Dakheeli, H. (2016). Hydro-mechanical analysis of shrinkage and shrinkage cracking due to environmental loads on saturated to unsaturated expansive soils (Master’s thesis, Oklahoma State University). HDL: 11244/300313
: Daniel, J., Gallucci Mazziero, B., Dunn, B., & Ochoa-Corona, F. (2016). A preemptive detection system to screen water for the presence of plant viruses. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Daniels, J. (2016). Capturing pathogenic plant waterborne viruses: A novel tool for agricultural diagnostics using three model viruses (Doctoral dissertation, Oklahoma State University). HDL: 11244/300279
: Das, S. & Mykles, D. L. (2016). A comparison of resources for the annotation of a de novo assembled transcriptome in the molting gland (y-organ) of the blackback land crab, gecarcinus lateralis. Integrative and Comparative Biology, 56(6), 1103–1112. doi:10.1093/icb/icw107
: Das, S., Pitts, N. L., Mudron, M. R., Durica, D. S., & Mykles, D. L. (2016). Transcriptome analysis of the molting gland (y-organ) from the blackback land crab, gecarcinus lateralis. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 17, 26–40. doi:10.1016/j.cbd.2015.11.003
: Ding, T. & Melcher, U. (2016). Inﬂuences of plant species, season and location on leaf endophytic bacterial communities of non-cultivated plants. PLOS ONE, 11(3), e0150895. doi:10.1371/journal.pone.0150895
: Dobhal, S., Olson, J. D., Arif, M., Suarez, J. A. G., & Ochoa-Corona, F. M. (2016). A simpliﬁed strategy for sensitive detection of rose rosette virus compatible with three RT-PCR chemistries. Journal of Virological Methods, 232, 47–56. doi:10.1016/j.jviromet.2016.01.013
: dos Santos, H. B., Bezerra, T. M. S., Pradella, J. G. C., Delabona, P., Lima, D., Gomes, E., Hartson, S. D., Rogers, J., Couger, B., & Prade, R. (2016). Myceliophthora thermophila m77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass. AMB Express, 6(1). doi:10.1186/s13568-016-0276-y
: Doust, A. N. (2016). The eﬀect of photoperiod on ﬂowering time, plant architecture, and biomass in setaria. In Genetics and genomics of setaria (pp. 197–210). Springer International Publishing. doi:10.1007/978-3-319-45105-3˙12
: Espindola, A. S. (2016). Eukaryotic plant pathogen detection through high throughput dna/rna sequencing data analysis (Doctoral dissertation, Oklahoma State University). HDL: 11244/300237
: Foster, C. A. [Clay A.] & West, A. H. (2016). Use of restrained molecular dynamics to predict the conformations of phosphorylated receiver domains in two-component signaling systems. Proteins: Structure, Function, and Bioinformatics, 85(1), 155–176. doi:10.1002/prot.25207
: Foster, C. A. [Clay Allen]. (2016). A computational approach for accessing phosphorylated response regulator conformations and signaling complexes involving the fungal phosphorelay protein ypd1 (Doctoral dissertation, University of Oklahoma). HDL: 11244/44926
: Frahm, K. A., Peﬀer, M. E., Zhang, J. Y., Luthra, S., Chakka, A. B., Couger, M. B., Chandran, U. R., Monaghan, A. P., & DeFranco, D. B. (2016). Research resource: The dexamethasone transcriptome in hypothalamic embryonic neural stem cells. Molecular Endocrinology, 30(1), 144–154. doi:10.1210/me.2015-1258
: Gallucci Mazziero, B. (2016). Waterborne plant virus sampling and detection in aqueous environment. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Garcia Suarez, J., Dobhal, S., & Ochoa-Corona, F. (2016). Virus detection of tobamovirus with wide spectrum degenerate oligonucleotides by td rt-pcr high resolution melting. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: García-Suarez, J. A., Dobhal, S., & Ochoa-Corona, F. M. (2016). Virus detection of tobamovirus with wide spectrum degenerate oligonucleotides by td-rt-pcr high resolution melting. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/ﬁles/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf
: Habiger, J., Watts, D., & Anderson, M. (2016). Multiple testing with heterogeneous multinomial distributions. Biometrics, 73(2), 562–570. doi:10.1111/biom.12586
: Hanafy, R. A., Couger, M., Baker, K., Murphy, C., O’Kane, S. D., Budd, C., French, D. P., Hoﬀ, W. D., & Youssef, N. (2016). Draft genome sequence of micrococcus luteus strain o’kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates. Genomics Data, 9, 148–153. doi:10.1016/j.gdata.2016.08.006
: Harris, A., Fu, C., Xiang, Q.-Y. (, Holland, L., & Wen, J. (2016). Testing the monophyly of aesculus l. and billia peyr., woody genera of tribe hippocastaneae of the sapindaceae. Molecular Phylogenetics and Evolution, 102, 145–151. doi:10.1016/j.ympev.2016.06.001
: Hu, L., Ma, L. M., Zheng, S., He, X., Wang, H., Brown, E. W., Hammack, T. S., & Zhang, G. (2016). Evaluation of 3m molecular detection system and ANSR pathogen detection system for rapid detection ofSalmonellafrom egg products. Poultry Science, pew399. doi:10.3382/ps/pew399
: Jayaraman, B., Brasseur, J., Haupt, S., & Lee, J. (2016). Deviations from Equilibrium in Daytime Atmospheric Boundary Layer Turbulence arising from Nonstationary Mesoscale Forcing. In Aps meeting abstracts (p. M13.003). Retrieved from http://adsabs.harvard.edu/abs/2016APS..DFDM13003J
: Kanost, M. R., Arrese, E. L., Cao, X., Chen, Y.-R., Chellapilla, S., Goldsmith, M. R., Grosse-Wilde, E., Heckel, D. G., Herndon, N., Jiang, H., Papanicolaou, A., Qu, J., Soulages, J. L., Vogel, H., Walters, J., Waterhouse, R. M., Ahn, S.-J., Almeida, F. C., An, C., Aqrawi, P., Bretschneider, A., Bryant, W. B., Bucks, S., Chao, H., Chevignon, G., Christen, J. M., Clarke, D. F., Dittmer, N. T., Ferguson, L. C., Garavelou, S., Gordon, K. H., Gunaratna, R. T., Han, Y., Hauser, F., He, Y., Heidel-Fischer, H., Hirsh, A., Hu, Y., Jiang, H., Kalra, D., Klinner, C., König, C., Kovar, C., Kroll, A. R., Kuwar, S. S., Lee, S. L., Lehman, R., Li, K., Li, Z., Liang, H., Lovelace, S., Lu, Z., Mansﬁeld, J. H., McCulloch, K. J., Mathew, T., Morton, B., Muzny, D. M., Neunemann, D., Ongeri, F., Pauchet, Y., Pu, L.-L., Pyrousis, I., Rao, X.-J., Redding, A., Roesel, C., Sanchez-Gracia, A., Schaack, S., Shukla, A., Tetreau, G., Wang, Y., Xiong, G.-H., Traut, W., Walsh, T. K., Worley, K. C., Wu, D., Wu, W., Wu, Y.-Q., Zhang, X., Zou, Z., Zucker, H., Briscoe, A. D., Burmester, T., Clem, R. J., Feyereisen, R., Grimmelikhuijzen, C. J., Hamodrakas, S. J., Hansson, B. S., Huguet, E., Jermiin, L. S., Lan, Q., Lehman, H. K., Lorenzen, M., Merzendorfer, H., Michalopoulos, I., Morton, D. B., Muthukrishnan, S., Oakeshott, J. G., Palmer, W., … Blissard, G. W. (2016). Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, manduca sexta. Insect Biochemistry and Molecular Biology, 76, 118–147. doi:10.1016/j.ibmb.2016.07.005
: Kapoor, U. & Shah, J. K. (2016). Preferential ionic interactions and microscopic structural changes drive nonideality in binary ionic liquid mixtures as revealed from molecular simulations. Industrial & Engineering Chemistry Research, 55(51), 13132–13146. doi:10.1021/acs.iecr.6b03314
: Katsalirou, E., Deng, S., Gerakis, A., & Nofziger, D. L. (2016). Long-term management eﬀects on soil p, microbial biomass p, and phosphatase activities in prairie soils. European Journal of Soil Biology, 76, 61–69. doi:10.1016/j.ejsobi.2016.07.001
: Konemann, C. E., Kard, B. M., Payton, M. E., Deng, S. P., Warren, J. G., & Wilson, T. M. (2016). CO2emissions from soil on oklahoma’s tallgrass prairie preserve in the presence or absence of termites (isoptera: Rhinotermitidae). The American Midland Naturalist, 176(1), 60–71. doi:10.1674/0003-0031-176.1.60
: Lam, W. K. (2016). Phase-modulation Induced Quantum Accelerator Modes (Doctoral dissertation, Oklahoma State University). Retrieved from http://adsabs.harvard.edu/abs/2016PhDT.......227L
: Larrea-Sarmiento, A. E., Arif, M., Olmedo-Velarde, A., Olson, J., & Ochoa-Corona, F. M. (2016). Sensitive detection and discrimination of hpwmov, wsmv and trimv using multiplex rt-pcr (part ii): Discrimination and detection of populations by high resolution melting. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/ﬁles/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf
: Li, X. (2016). Microbial communities in soil ecosystems of under diﬀerent land uses (Doctoral dissertation, Oklahoma State University).
: Ma, J., Pajouh, F. M., Balasundaram, B., & Boginski, V. (2016). The minimum spanningk-core problem with bounded CVaR under probabilistic edge failures. INFORMS Journal on Computing, 28(2), 295–307. doi:10.1287/ijoc.2015.0679
: Maulik, R. & San, O. (2016). Dynamic modeling of the horizontal eddy viscosity coeﬃcient for quasigeostrophic ocean circulation problems. Journal of Ocean Engineering and Science, 1(4), 300–324. doi:10.1016/j.joes.2016.08.002
: Mazziero, B. G. (2016). Assessment of a virus sampling and detection method for water testing using pepino mosaic virus (Master’s thesis, Oklahoma State University). HDL: 11244/300362
: Miao, Z. (2016). Combinatorial and global optimization approaches to the maximum quasi-clique problem (Doctoral dissertation, Oklahoma State University).
: Miller, N. T., Fuller, D., Couger, M., Bagazinski, M., Boyne, P., Devor, R. C., Hanafy, R. A., Budd, C., French, D. P., Hoﬀ, W. D., & Youssef, N. (2016). Draft genome sequence of pseudomonas moraviensis strain devor implicates metabolic versatility and bioremediation potential. Genomics Data, 9, 154–159. doi:10.1016/j.gdata.2016.08.004
: Moghadam, F., Couger, M., Russ, B., Ramsey, R., Hanafy, R. A., Budd, C., French, D. P., Hoﬀ, W. D., & Youssef, N. (2016). Draft genome sequence and detailed analysis of pantoea eucrina strain russ and implication for opportunistic pathogenesis. Genomics Data, 10, 63–68. doi:10.1016/j.gdata.2016.09.006
: Mohanty, R. P. (2016). Pollen biology and landscape ecology of juniperus: An integrative study using quantitave molecular approaches, ultrastructure and habitat modeling (Doctoral dissertation, University of Tulsa). Retrieved from http://argo.library.okstate.edu/login?url=https://search.proquest.com/docview/1830451754?accountid=4117
: MOLINA CÁRDENAS, S., Salazar Aguirre, A., Ochoa-Corona, F., & Olson, J. (2016). Fluorogenic detection of plant viruses by helicase dependent ampliﬁcation with self-quenched primers. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Moncrief, I., Garzon, C., Marek, S., Stack, J., Gamliel, A., Garrido, P., Proaño, F., Gard, M., Dehne, H., & Fletcher, J. (2016). Development of simple sequence repeat (SSR) markers for discrimination among isolates of fusarium proliferatum. Journal of Microbiological Methods, 126, 12–17. doi:10.1016/j.mimet.2016.03.013
: Moore, J., Yang, R., Wheeler, K., & Youssef, N. (2016). Sequencing the microbial world one bug at a time. Research Reports from Life Science Freshmen Research Scholars, 2(1). Retrieved from https://undergradsciencejournals.okstate.edu/index.php/LSFRS/article/view/2979
: Moradi, E. (2016). Decomposition algorithms for detecting low-diameter clusters in graphs (Doctoral dissertation, Oklahoma State University). HDL: 11244/48850
: Mortazavian, H. (2016). Polymer adsorption on silica and wettability of graphene oxide surfaces, experiments and simulations (Doctoral dissertation, Oklahoma State University). HDL: 11244/48853
: Mortazavian, H., Fennell, C. J., & Blum, F. D. (2016). Surface bonding is stronger for poly(methyl methacrylate) than for poly(vinyl acetate). Macromolecules, 49(11), 4211–4219. doi:10.1021/acs.macromol.6b00521
: Mykles, D. L., Burnett, K. G., Durica, D. S., Joyce, B. L., McCarthy, F. M., Schmidt, C. J., & Stillman, J. H. (2016). Resources and recommendations for using transcriptomics to address grand challenges in comparative biology. Integrative and Comparative Biology, 56(6), 1183–1191. doi:10.1093/icb/icw083
: Neeman, H., Ramadugu, S. K., Romanella, A., Rush, J., Sherman, A. H., Stengel, B., Voss, D., Bergstrom, A., Brunson, D., Ganote, C., Gray, Z., Guilfoos, B., Kalescky, R., Lemley, E., & Moore, B. G. (2016). The advanced cyberinfrastructure research and education facilitators virtual residency. In Proceedings of the XSEDE16 on diversity, big data, and science at scale - XSEDE16. ACM Press. doi:10.1145/2949550.2949584
: Ochoa-Corona, F. M., Daniels, J., Gallucci-Mazziero, B., Carrillo-Tarazona, Y., Cardozo-Burgos, C., & Ochoa, F. M. (2016). Toward broad detection of plant waterborne viruses. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/ﬁles/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf
: Ochoa-Corona, F. & Carrillo Tarazona, Y. (2016). Validation of rt-pcr high resolution melting as a detection method of tombusvirus. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Ochoa-Corona, F., Salazar Aguirre, A. A. M., Molina Cárdenas, S., Olmedo-Velarde, A., Dobhal, S., Olson, J., Babu, B., & Paret, M. (2016). Development of eﬃcient diagnostic tools to enable rapid, easy-to-use, accurate and aﬀordable detection of rose rosette virus. In Abstracts of special session presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.164–S4.183). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.164
: Olmedo-Velarde, A., Larrea-Sarmiento, A. E., Flores, F. J., Elbeaino, T., & Ochoa-Corona, F. M. (2016). Toward a broad detection of emaravirusspecies: Qrt-pcr-hrm and endpoint rt-pcr. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/ﬁles/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf
: Olmedo-Velarde, A., Larrea-Sarmiento, A. E., & Ochoa-Corona, F. M. (2016). Discriminating potexvirus species by qrt-pcr coupled to high resolution melting. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/ﬁles/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf
: Olmedo-Velarde, A. & Ochoa-Corona, F. (2016). Discriminating potexvirus species by rt-pcr coupled to high resolution melting. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Olmedo-Velarde, A., Ochoa-Corona, F., & Elbeaino, T. (2016). Toward broad detection of emaraviruses: Endpoint rt-pcr. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Pajouh, F. M., Balasundaram, B., & Hicks, I. V. (2016). On the 2-club polytope of graphs. Operations Research, 64(6), 1466–1481. doi:10.1287/opre.2016.1500
: Pajouh, F. M., Moradi, E., & Balasundaram, B. (2016). Detecting large risk-averse 2-clubs in graphs with random edge failures. Annals of Operations Research, 249(1-2), 55–73. doi:10.1007/s10479-016-2279-0
: Paranahewage, S. S., Gierhart, C. S., & Fennell, C. J. (2016). Predicting water-to-cyclohexane partitioning of the SAMPL5 molecules using dielectric balancing of force ﬁelds. Journal of Computer-Aided Molecular Design, 30(11), 1059–1065. doi:10.1007/s10822-016-9950-z
: Peña Zuniga, L., Ochoa-Corona, F., & Ali, A. (2016). Multiplex rt-pcr detection of eight viruses infecting cucurbits and discrimination using high resolution melting analysis. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientiﬁc Societies. doi:10.1094/phyto-106-12-s4.1
: Pleinert, M. .-.-O., von Zanthier, J., & Agarwal, G. S. (2016). Phase control of the quantum statistics of collective emission. doi:10.48550/ARXIV.1608.00137
: Salazar, A., Molina, S., Ochoa-Corona, F. M., & Olson, J. (2016). Detección de rose rosette virus medianteel método de ampliﬁcación isotérmica de ácidos nucleicos lamp (loop-mediated isothermal ampliﬁcation). In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/ﬁles/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf
: Schneider, W. D. H., Gonçalves, T. A., Uchima, C. A., Couger, M. B., Prade, R., Squina, F. M., Dillon, A. J. P., & Camassola, M. (2016). Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass. Biotechnology for Biofuels, 9(1). doi:10.1186/s13068-016-0476-3
: Segato, F., Couger, B., Prade, R. A., Correr, F. H., Corrêa, F. E., Margarido, G. R. A., & Polikarpov, I. (2016). The synergic strategies employed by aspergillus niveus and myceliophthora thermophila to degrade sugarcane bagasse. In Symposium on biotechnology for fuels and chemicals - sbfc. Society for Industrial Microbiology - SIMB. Retrieved from https://sim.confex.com/sim/38th/webprogram/Paper31988.html
: Selvaraju, S., Adhikari, S., Hopson, R. A., Dai, S., Rheingold, A. L., Borunda, M. F., & Nelson, T. L. (2016). Eﬀects of structural variations on the optical and electronic properties of eumelanin-inspired small molecules. Journal of Materials Chemistry C, 4(18), 3995–3999. doi:10.1039/c5tc03982g
: Singh, A., Fennell, C. J., & Weaver, J. D. (2016). Photocatalyst size controls electron and energy transfer: Selectable E/Z isomer synthesis via C–F alkenylation. Chemical Science, 7(11), 6796–6802. doi:10.1039/c6sc02422j
: Timmons, C., Trees, E., Ribot, E. M., Gerner-Smidt, P., LaFon, P., Im, S., & Ma, L. M. (2016). Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-o157 shiga toxin-producing escherichia coli. Journal of Microbiological Methods, 125, 70–80. doi:10.1016/j.mimet.2016.04.005
: Vijayakumar, G., Brasseur, J., Lavely, A. W., Jayaraman, B., & Craven, B. (2016). Interaction of atmospheric turbulence with blade boundary layer dynamics on a 5mw wind turbine using blade-boundary-layer-resolved CFD with hybrid URANS-LES. In 34th wind energy symposium. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2016-0521
: Wang, B., Yi, H., Xu, K., & Wang, Q. (2016). Prediction of the self-accelerating decomposition temperature of organic peroxides using QSPR models. Journal of Thermal Analysis and Calorimetry, 128(1), 399–406. doi:10.1007/s10973-016-5922-8
: Wang, B., Zhou, L., Xu, K., & Wang, Q. (2016). Prediction of minimum ignition energy from molecular structure using quantitative structure–property relationship (QSPR) models. Industrial & Engineering Chemistry Research, 56(1), 47–51. doi:10.1021/acs.iecr.6b04347
: Zhao, S., Chen, X., Deng, S., Dong, X., Song, A., Yao, J., Fang, W., & Chen, F. (2016). The eﬀects of fungicide, soil fumigant, bio-organic fertilizer and their combined application on chrysanthemum fusarium wilt controlling, soil enzyme activities and microbial properties. Molecules, 21(4), 526. doi:10.3390/molecules21040526

2015

: Alam, M. M. (2015). Visual masking in natural scenes: Database, models, and an application to perceptual image coding (Doctoral dissertation, Oklahoma State University). HDL: 11244/45128
: Balasundaram, B. [Baski]. (2015a). Cliques clubs. In Proceedings of a seminar series for the department of industrial and systems engineering at Texas A&M University.
: Balasundaram, B. [Baski]. (2015b). On the 2-club polytope of graphs. In Proceedings of the 22nd international symposium on mathematical programming.
: Branham, K. (2015). Use of ultra-high-density snp data for genetic evaluation of predicted feed intake, feed eﬃciency, carcass, and growth traits in hereford cattle (Master’s thesis, Oklahoma State University). HDL: 11244/45236
: Brasseur, J., Jayaraman, B., Haupt, S., & Lee, J. (2015). Nonequilibrium Response of the Daytime Atmospheric Boundary Layer to Mesoscale Forcing. In Aps meeting abstracts (E21.001). Retrieved from http://adsabs.harvard.edu/abs/2015APS..DFDE21001B
: Brunson, D., Akin, D., Alderman, P., Creager, G., Deaton, J., Dumancas, G., Evert, J., Fennell, C., Fondjo Fotou, F., Frinkle, K., Gentis, D., Hale, J., Hoyt, P., Lemley, E., Linde, E., George, L., Perdeep, M., Morris, M., Mosher, J., Schafer, J., Severini, H., Snow, J., Xiong, N., & Neeman, H. (2015). The oneoklahoma cyberinfrastructure initiative: A model for multi-institutional collaboration conference. OneOklahoma Cyberinfrastructure Initiative. National Science Foundation Workshop on The Role of Regional Organizations in Imporving Access to National Cyberinfrastructure, white paper. HDL: 11244/34794
: Buchanan, J. W. [J. W.], Koltes, J. E., Reecy, J. M., & Mateescu, R. G. (2015). Deriving gene networks involving tenderness and sensory attributes in steaks from angus beef cattle. In Proceedings of the international plant and animal genome conference. Plant and Animal XXIII Conference, San Diego, CA.
: Buchanan, J. W. [Justin William]. (2015). Genetic parameter estimation and gene network derivation for fatty acid traits in angus beef cattle (Doctoral dissertation, Oklahoma State University). HDL: 11244/45142
: Cao, X., He, Y., Hu, Y., Wang, Y., Chen, Y.-R., Bryant, B., Clem, R. J., Schwartz, L. M., Blissard, G., & Jiang, H. (2015). The immune signaling pathways of manduca sexta. Insect Biochemistry and Molecular Biology, 62, 64–74. doi:10.1016/j.ibmb.2015.03.006
: Cao, X., He, Y., Hu, Y., Zhang, X., Wang, Y., Zou, Z., Chen, Y., Blissard, G. W., Kanost, M. R., & Jiang, H. (2015). Sequence conservation, phylogenetic relationships, and expression proﬁles of nondigestive serine proteases and serine protease homologs in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 51–63. doi:10.1016/j.ibmb.2014.10.006
: Cao, X. & Jiang, H. (2015). Integrated modeling of protein-coding genes in the manduca sexta genome using RNA-seq data from the biochemical model insect. Insect Biochemistry and Molecular Biology, 62, 2–10. doi:10.1016/j.ibmb.2015.01.007
: Chaturvedula, N. (2015). Extreme compression for novelty detection in bandwidth constrained environments (Master’s thesis, Oklahoma State University). HDL: 11244/45147
: Couger, M. B. [M. B.], Hanafy, R. A., Edens, C., Budd, C., French, D. P., Hoﬀ, W. D., Elshahed, M. S., & Youssef, N. H. (2015). Draft genome of the arthrobacter sp. strain edens01. Genome Announcements, 3(6). doi:10.1128/genomea.01475-15
: Couger, M. B. [M. B.], Hanafy, R. A., Mitacek, R. M., Budd, C., French, D. P., Hoﬀ, W. D., Elshahed, M. S., & Youssef, N. H. (2015). The draft genome sequence of xanthomonas sp. strain mitacek01 expands the pangenome of a genus of plant pathogens. Genome Announcements, 3(6). doi:10.1128/genomea.01450-15
: Couger, M. B. [M. B.], Hurlbut, A., Murphy, C. L., Budd, C., French, D. P., Hoﬀ, W. D., Elshahed, M. S., & Youssef, N. H. (2015). Draft genome sequence of the environmental isolate chryseobacterium sp. hurlbut01. Genome Announcements, 3(5). doi:10.1128/genomea.01071-15
: Couger, M. B. [M. B.], Youssef, N. H., Struchtemeyer, C. G., Liggenstoﬀer, A. S., & Elshahed, M. S. (2015). Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate orpinomyces sp. strain c1a. Biotechnology for Biofuels, 8(1). doi:10.1186/s13068-015-0390-0
: Couger, M. B. [Matthew B]. (2015). Genomic and transcriptomic analysis of the anerobic fungus orpinomyces strain c1a, a versatile biodegrader of plant biomass (Doctoral dissertation, Oklahoma State University). HDL: 11244/54511
: Dutta, M., Ali, A., & Melcher, U. (2015). Detection, discrimination and discovery of a new tobacco streak virus strain. Journal of Virological Methods, 221, 15–21. doi:10.1016/j.jviromet.2015.03.025
: Espindola, A., Schneider, W., Hoyt, P. R., Marek, S. M., & Garzon, C. (2015). A new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes. International Journal of Data Mining and Bioinformatics, 12(2), 115. doi:10.1504/ijdmb.2015.069422
: Francisco, C. A., Mermin, J., & Schweig, J. (2015). LCM lattices supporting pure resolutions. Proceedings of the American Mathematical Society, 144(6), 2315–2325. doi:10.1090/proc/12890
: Gao, Y.-D., Harris, A., & He, X.-J. (2015). Morphological and ecological divergence of lilium and nomocharis within the hengduan mountains and qinghai-tibetan plateau may result from habitat specialization and hybridization. BMC Evolutionary Biology, 15(1). doi:10.1186/s12862-015-0405-2
: He, Y., Cao, X., Li, K., Hu, Y., Chen, Y.-r., Blissard, G., Kanost, M. R., & Jiang, H. (2015). A genome-wide analysis of antimicrobial eﬀector genes and their transcription patterns in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 23–37. doi:10.1016/j.ibmb.2015.01.015
: Heisterkamp, D. R. (2015). Lambda consensus clustering. In 2015 ieee 14th international conference on machine learning and applications (icmla) (pp. 410–413). doi:10.1109/ICMLA.2015.172
: Jayaraman, B., Brasseur, J., & Wang, Y. (2015). Inﬂuence of Non-homogeneous Particle Distributions on Drug Release in a Couette in vitro Dissolution Device. In Aps meeting abstracts (A40.002). Retrieved from http://adsabs.harvard.edu/abs/2015APS..DFDA40002J
: Lin, P. (2015). Applicatioin of nuclear magnetic resonance to protein structure and protein-ligand interation studies (Doctoral dissertation, Oklahoma State University). HDL: 11244/45273
: Ma, J. (2015). Proactive approaches for system design under uncertainty applied to network synthesis and capacity planning (Doctoral dissertation, Oklahoma State University). HDL: 11244/45364
: Mandelli, F., Ramires, B. O., Couger, M. B., Paixão, D. A. A., Camilo, C. M., Polikarpov, I., Prade, R., Riaño-Pachón, D. M., & Squina, F. M. (2015). Draft genome sequence of the thermophile thermus ﬁliformis ATCC 43280, producer of carotenoid-(di)glucoside-branched fatty acid (di)esters and source of hyperthermostable enzymes of biotechnological interest. Genome Announcements, 3(3). doi:10.1128/genomea.00475-15
: Matyi, S. A., Hoyt, P. R., Ayoubi-Canaan, P., Hasan, N. A., & Gustafson, J. E. (2015). Draft genome sequence of strain ATCC 33958, reported to be elizabethkingia miricola. Genome Announcements, 3(4). doi:10.1128/genomea.00828-15
: Miao, Z. (2015). On the lagrangian dual of the maximum quasiclique problem. In Proceedings of the 2015 informs annual meeting.
: Moradi, E. & Balasundaram, B. [Balabhaskar]. (2015). Finding a maximum k-club using the k-clique formulation and canonical hypercube cuts. Optimization Letters, 12(8), 1947–1957. doi:10.1007/s11590-015-0971-7
: Mortazavian, H., Fennell, C. J., & Blum, F. D. (2015). Structure of the interfacial region in adsorbed poly(vinyl acetate) on silica. Macromolecules, 49(1), 298–307. doi:10.1021/acs.macromol.5b02214
: Nanugonda, S. S. B. (2015). Parallel implementation of a forecasting algorithm (Master’s thesis, Oklahoma State University). HDL: 11244/317818
: Narayanan, B. (2015). Impact of replenishment frequency driven product allocation in a retail supply chain (Master’s thesis, Oklahoma State University). HDL: 11244/45288
: Neeman, H., Lemley, E., Louthan, G., Monaco, G., Morris, M., Snow, J., Zimmerman, B., Adams, K., Alexander, J., Brunson, D., Calhoun, S. P., Deaton, J., Fotou, F. F., Frinkle, K., & Gray, Z. (2015). On fostering a culture of research cyberinfrastructure grant proposals within a community of service providers in an EPSCoR state. In Proceedings of the 2015 XSEDE conference on scientiﬁc advancements enabled by enhanced cyberinfrastructure - XSEDE ’15. ACM Press. doi:10.1145/2792745.2792764
: Nicholson, S. J., Nickerson, M. L., Dean, M., Song, Y., Hoyt, P. R., Rhee, H., Kim, C., & Puterka, G. J. (2015). The genome of diuraphis noxia, a global aphid pest of small grains. BMC Genomics, 16(1). doi:10.1186/s12864-015-1525-1
: Prabhakaran, M., Couger, M. B., Jackson, C. A., Weirick, T., & Fathepure, B. Z. (2015). Genome sequences of the lignin-degrading pseudomonas sp. strain YS-1p and rhizobium sp. strain YS-1r isolated from decaying wood. Genome Announcements, 3(2). doi:10.1128/genomea.00019-15
: Rao, X.-J., Cao, X., He, Y., Hu, Y., Zhang, X., Chen, Y.-R., Blissard, G., Kanost, M. R., Yu, X.-Q., & Jiang, H. (2015). Structural features, evolutionary relationships, and transcriptional regulation of c-type lectin-domain proteins in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 75–85. doi:10.1016/j.ibmb.2014.12.006
: Al-Rubaye, A. A. K., Couger, M. B., Ojha, S., Pummill, J. F., Koon, J. A., Wideman, R. F., & Rhoads, D. D. (2015). Genome analysis of staphylococcus agnetis, an agent of lameness in broiler chickens. PLOS ONE, 10(11), e0143336. doi:10.1371/journal.pone.0143336
: Shyamal, S., Anilkumar, G., Bhaskaran, R., Doss, G., & Durica, D. (2015). Signiﬁcant ﬂuctuations in ecdysteroid receptor gene (EcR) expression in relation to seasons of molt and reproduction in the grapsid crab, metopograpsus messor (brachyura: Decapoda). General and Comparative Endocrinology, 211, 39–51. doi:10.1016/j.ygcen.2014.11.006
: Tetreau, G., Cao, X., Chen, Y.-R., Muthukrishnan, S., Jiang, H., Blissard, G. W., Kanost, M. R., & Wang, P. (2015). Overview of chitin metabolism enzymes in manduca sexta: Identiﬁcation, domain organization, phylogenetic analysis and gene expression. Insect Biochemistry and Molecular Biology, 62, 114–126. doi:10.1016/j.ibmb.2015.01.006
: Tetreau, G., Dittmer, N. T., Cao, X., Agrawal, S., Chen, Y.-R., Muthukrishnan, S., Haobo, J., Blissard, G. W., Kanost, M. R., & Wang, P. (2015). Analysis of chitin-binding proteins from manduca sexta provides new insights into evolution of peritrophin a-type chitin-binding domains in insects. Insect Biochemistry and Molecular Biology, 62, 127–141. doi:10.1016/j.ibmb.2014.12.002
: Utt, K. L., Rivero, P., Mehboudi, M., Harriss, E. O., Borunda, M. F., SanJuan, A. A. P., & Barraza-Lopez, S. (2015). Intrinsic defects, ﬂuctuations of the local shape, and the photo-oxidation of black phosphorus. ACS Central Science, 1(6), 320–327. doi:10.1021/acscentsci.5b00244
: Vemula, S. & Crick, C. (2015). Hadoop image processing framework. In 2015 IEEE international congress on big data. IEEE. doi:10.1109/bigdatacongress.2015.80
: Vijayakumar, G., Lavely, A., Jayaraman, B., Craven, B., & Brasseur, J. (2015). Dominant mechanism of load ﬂuctuations on a wind turbine in a realistic atmosphere through Hybrid URANS-LES. In Aps meeting abstracts (p. D28.004). Retrieved from http://adsabs.harvard.edu/abs/2015APS..DFDD28004V
: Wang, Z. (2015). Parallel algorithm for ﬁnding all minimal maximum subsequences via random-walk theory (Doctoral dissertation, Oklahoma State University). HDL: 11244/45326
: Weitemier, K., Straub, S. C., Fishbein, M., & Liston, A. (2015). Intragenomic polymorphisms among high-copy loci: A genus-wide study of nuclear ribosomal DNA inAsclepias(apocynaceae). PeerJ, 3, e718. doi:10.7717/peerj.718
: Wongdhamma, W. (2015). Statistical models for detecting existence of obstructive sleep apnea, predicting its severity, and forecasting future episodes (Master’s thesis, Oklahoma State University). HDL: 11244/45388
: Worcester, L. (2015). Phylogeny and biogeography of the podostemma clade, asclepias l. (apocynaceae) (Doctoral dissertation, Oklahoma State University).
: Youssef, N. H., Couger, M., McCully, A. L., Criado, A. E. G., & Elshahed, M. S. (2015). Assessing the global phylum level diversity within the bacterial domain: A review. Journal of Advanced Research, 6(3), 269–282. doi:10.1016/j.jare.2014.10.005
: Yukihara, E. G., Doull, B. A., Ahmed, M., Brons, S., Tessonnier, T., Jäkel, O., & Greilich, S. (2015). Time-resolved optically stimulated luminescence of Al₂O₃:C for ion beam therapy dosimetry. Physics in Medicine and Biology, 60(17), 6613–6638. doi:10.1088/0031-9155/60/17/6613
: Zhang, X., He, Y., Cao, X., Gunaratna, R. T., Chen, Y.-r., Blissard, G., Kanost, M. R., & Jiang, H. (2015). Phylogenetic analysis and expression proﬁling of the pattern recognition receptors: Insights into molecular recognition of invading pathogens in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 38–50. doi:10.1016/j.ibmb.2015.02.001
: Zhang, X., Zheng, Y., Cao, X., Ren, R., Yu, X.-Q., & Jiang, H. (2015). Identiﬁcation and proﬁling of manduca sexta microRNAs and their possible roles in regulating speciﬁc transcripts in fat body, hemocytes, and midgut. Insect Biochemistry and Molecular Biology, 62, 11–22. doi:10.1016/j.ibmb.2014.08.006

2014

: Alam, M. M., Vilankar, K. P., Field, D. J., & Chandler, D. M. (2014). Local masking in natural images: A database and analysis. Journal of Vision, 14(8), 22–22. doi:10.1167/14.8.22. PMID: 25074900
: Buchanan, J. W., Koltes, J. E., Reecy, J. M., & Mateescu, R. G. (2014). Deriving gene networks underlying fatty acid composition of the triacylglycerol lipid fraction in angus longissimus muscle. In Proceedings of the international plant and animal genome conference. Plant and Animal XXII Conference, San Diego, CA.
: Couger, M. B., Pipes, L., Squina, F., Prade, R., Siepel, A., Palermo, R., Katze, M. G., Mason, C. E., & Blood, P. D. (2014). Enabling large-scale next-generation sequence assembly with blacklight. Concurrency and Computation: Practice and Experience, 26(13), 2157–2166. doi:10.1002/cpe.3231. PMID: 25294974
: Durica, D. S., Das, S., Najar, F., Roe, B., Phillips, B., Kappalli, S., & Anilkumar, G. (2014). Alternative splicing in the ﬁddler crab cognate ecdysteroid receptor: Variation in receptor isoform expression and DNA binding properties in response to hormone. General and Comparative Endocrinology, 206, 80–95. doi:10.1016/j.ygcen.2014.05.034. PMID: 25025945
: Dutta, M., Bashir, N. S., Palmer, M. W., & Melcher, U. (2014). Genomic characterization of ambrosia asymptomatic virus 1 and evidence of other tymovirales members in the oklahoma tallgrass prairie revealed by sequence analysis. Archives of Virology, 159(7), 1755–1764. doi:10.1007/s00705-014-1985-7. PMID: 24519459
: Farag, I. F., Davis, J. P., Youssef, N. H., & Elshahed, M. S. (2014). Global patterns of abundance, diversity and community structure of the aminicenantes (candidate phylum OP8). PLoS ONE, 9(3), e92139. doi:10.1371/journal.pone.0092139. PMID: 24637619
: Kang, Z. (2014). Development and applications of infrared structural biology (Doctoral dissertation, Oklahoma State University). HDL: 11244/14927
: Keesee, M., Zhang, Y., Cox, S., Mouser, M., Chavez, C., Wall, S., Goode, A., Deaton, J., Maheshwari, S., Emery, B., Merrill, L., McVey, S., Mohr, V., Sardi, L., Neeman, H., Alexander, J., George, B., Gray, Z., & Brunson, D. (2014). Digital oklahoma: Harnessing the speed of light. doi:10.13140/RG.2.1.2293.4881
: Khan, M., Fan, G., Heisterkamp, D. R., & Yu, L. (2014). Automatic target recognition in infrared imagery using dense HOG features and relevance grouping of vocabulary. In The IEEE conference on computer vision and pattern recognition (CVPR) workshops.
: Lin, P., Chen, X., Moktan, H., Arrese, E. L., Duan, L., Wang, L., Soulages, J. L., & Zhou, D. H. (2014). Membrane attachment and structure models of lipid storage droplet protein 1. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1838(3), 874–881. doi:10.1016/j.bbamem.2013.12.003. PMID: 24333382
: Lu, H., Bukkapatnam, S., Harimkar, S., Singh, R., & Bardenhagen, S. (2014). Simulations of failure via three-dimensional cracking in fuel cladding for advanced nuclear fuels. Oﬃce of Scientiﬁc and Technical Information (OSTI). doi:10.2172/1116513
: Ma, J. (2014). The minimum spanning k-core problem with bounded CVaR under probabilistic edge failures. In Proceedings of the 2014 INFORMS annual meeting.
: Matyi, S. A., Ramaraj, T., Sundararajan, A., Lindquist, I. E., Devitt, N. P., Schilkey, F. D., Lamichhane-Khadka, R., Hoyt, P. R., Mudge, J., & Gustafson, J. E. (2014). Draft genomes of heterogeneous vancomycin-intermediate staphylococcus aureus strain MM66 and MM66 derivatives with altered vancomycin resistance levels. Genome Announcements, 2(4). doi:10.1128/genomea.00688-14. PMID: 25013145
: Melcher, U., Verma, R., & Schneider, W. L. (2014). Metagenomic search strategies for interactions among plants and multiple microbes. Frontiers in Plant Science, 5. doi:10.3389/fpls.2014.00268. HDL: 11244/321371
: Miao, Z. (2014). A global optimization approach for the maximum quasi-clique problem. In Proceedings of the 2014 INFORMS annual meeting.
: Miao, Z., Balasundaram, B., & Pasiliao, E. L. (2014). An exact algorithm for the maximum probabilistic clique problem. Journal of Combinatorial Optimization, 28(1), 105–120. doi:10.1007/s10878-013-9699-4
: Moradi, E. (2014). Finding a maximum k-club using the k-clique formation and lazy cuts. In Proceedings of the 2014 INFORMS annual meeting.
: Neeman, H., Gray, Z., Huebsch, E., Louthan, G., Runion, M., Snow, J., Zimmerman, B., Akin, D., Alexander, J., Brunson, D., Calhoun, S. P., Deaton, J., Fotou, F. F., George, B., & Gentis, D. (2014). The OneOklahoma friction free network. In Proceedings of the 2014 annual conference on extreme science and engineering discovery environment - XSEDE ’14. ACM Press. doi:10.1145/2616498.2616542. HDL: 11244/15456
: Norouzzadeh, P., Myles, C. W., & Vashaee, D. (2014). Structural, electronic, phonon and thermodynamic properties of hypothetical type-VIII clathrates Ba₈Si₄₆ and Ba₈Al₁₆Si₃₀ investigated by ﬁrst principles. Journal of Alloys and Compounds, 587, 474–480. doi:10.1016/j.jallcom.2013.10.190
: Ramaraj, T., Matyi, S. A., Sundararajan, A., Lindquist, I. E., Devitt, N. P., Schilkey, F. D., Lamichhane-Khadka, R., Hoyt, P. R., Mudge, J., & Gustafson, J. E. (2014). Draft genome sequences of vancomycin-susceptible staphylococcus aureus related to heterogeneous vancomycin-intermediate s. aureus. Genome Announcements, 2(5). doi:10.1128/genomea.01033-14. PMID: 25301662
: Razzaghi Souﬁani, A. (2014). Computational studies of molybdenum oxide clusters and environmental corrosion of iron and zinc (Doctoral dissertation, Oklahoma State University). HDL: 11244/15083
: Sahu, S. S., Weirick, T., & Kaundal, R. (2014). Predicting genome-scale arabidopsis-pseudomonas syringae interactome using domain and interolog-based approaches. BMC Bioinformatics, 15(Suppl 11), S13. doi:10.1186/1471-2105-15-s11-s13. HDL: 11244/302068
: Stobbe, A. H., Schneider, W. L., Hoyt, P. R., & Melcher, U. (2014). Screening metagenomic data for viruses using the e-probe diagnostic nucleic acid assay. Phytopathology, 104(10), 1125–1129. doi:10.1094/phyto-11-13-0310-r. PMID: 25207481
: Struchtemeyer, C. G., Ranganathan, A., Couger, M. B., Liggenstoﬀer, A. S., Youssef, N. H., & Elshahed, M. S. (2014). Survival of the anaerobic fungus orpinomyces sp. strain C1A after prolonged air exposure. Scientiﬁc Reports, 4(1). doi:10.1038/srep06892. PMID: 25367149
: Ternes, C. M. & Schönknecht, G. (2014). Gene transfers shaped the evolution of de novo NAD⁺ biosynthesis in eukaryotes. Genome Biology and Evolution, 6(9), 2335–2349. doi:10.1093/gbe/evu185. HDL: 11244/321439
: Weirick, T., Sahu, S. S., Mahalingam, R., & Kaundal, R. (2014). LacSubPred: Predicting subtypes of laccases, an important lignin metabolism-related enzyme class, using in silico approaches. BMC Bioinformatics, 15(Suppl 11), S15. doi:10.1186/1471-2105-15-s11-s15. HDL: 11244/302081

2013

: Borja, G. (2013). Evolutionary history of paysonia (brassicaceae) (Master’s thesis, Oklahoma State University). HDL: 11244/11144
: Coyner, B. S., Braun, J. K., Mares, M. A., & Van Den Bussche, R. A. (2013). Taxonomic validity of species groups in the genus Akodon (rodentia, cricetidae). Zoologica Scripta, 42(4), 335–350. doi:10.1111/zsc.12014
: Dai, S. (2013). First principle computational studies on hydrogen bond switch in biological proton transfer (Master’s thesis, Oklahoma State University). HDL: 11244/11150
: Das, S. & Durica, D. S. (2013). Ecdysteroid receptor signaling disruption obstructs blastemal cell proliferation during limb regeneration in the ﬁddler crab, uca pugilator. Molecular and Cellular Endocrinology, 365(2), 249–259. doi:10.1016/j.mce.2012.10.026. PMID: 23142248
: Davis, M. (2013). Molecular coordination of iron homeostasis by microrna (Doctoral dissertation, Oklahoma State University). HDL: 11244/45117
: Davis, M. & Clarke, S. (2013). Inﬂuence of microRNA on the maintenance of human iron metabolism. Nutrients, 5(7), 2611–2628. doi:10.3390/nu5072611. PMID: 23846788
: Ding, T., Palmer, M. W., & Melcher, U. (2013). Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria. BMC Microbiology, 13(1), 1. doi:10.1186/1471-2180-13-1. HDL: 11244/321217
: Espindola, A. S. (2013). Massively parallel sequencing (mps) as a diagnostic and forensic analysis tool for important fungi and chromista plant pathogens (Master’s thesis, Oklahoma State University). HDL: 11244/11155
: Gao, Y.-D., Harris, A., Zhou, S.-D., & He, X.-J. (2013). Evolutionary events in lilium (including nomocharis, liliaceae) are temporally correlated with orogenies of the q–t plateau and the hengduan mountains. Molecular Phylogenetics and Evolution, 68(3), 443–460. doi:10.1016/j.ympev.2013.04.026. PMID: 23665039
: Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., MacManes, M. D., Ott, M., Orvis, J., Pochet, N., Strozzi, F., Weeks, N., Westerman, R., William, T., Dewey, C. N., Henschel, R., LeDuc, R. D., Friedman, N., & Regev, A. (2013). De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis. Nature Protocols, 8(8), 1494–1512. doi:10.1038/nprot.2013.084. PMID: 23845962
: Kaundal, R., Sahu, S. S., Verma, R., & Weirick, T. (2013). Identiﬁcation and characterization of plastid-type proteins from sequence-attributed features using machine learning. BMC Bioinformatics, 14(S14). doi:10.1186/1471-2105-14-s14-s7. HDL: 11244/302052
: Ma, J. & Balasundaram, B. (2013). Solving chance-constrained spanning k-core problem via decomposition and integer programming. IIE Annual Conference. Proceedings, 2774–2783. Retrieved from http://search.proquest.com/docview/1471961684/
: Matyi, S. A., Hoyt, P. R., Hosoyama, A., Yamazoe, A., Fujita, N., & Gustafson, J. E. (2013). Draft genome sequences of elizabethkingia meningoseptica. Genome Announcements, 1(4). doi:10.1128/genomea.00444-13. PMID: 23846266
: Matyi, S., Dupre, J., Johnson, W., Hoyt, P., White, D., Brody, T., Odenwald, W., & Gustafson, J. (2013). Isolation and characterization of staphylococcus aureus strains from a paso del norte dairy. Journal of Dairy Science, 96(6), 3535–3542. doi:10.3168/jds.2013-6590. PMID: 23608491
: Mauro-Herrera, M., Wang, X., Barbier, H., Brutnell, T. P., Devos, K. M., & Doust, A. N. (2013). Genetic control and comparative genomic analysis of ﬂowering time in setaria (poaceae). G3: GENES, GENOMES, GENETICS, 3(2), 283–295. doi:10.1534/g3.112.005207. PMID: 23390604
: Neeman, H., Gray, Z., Brunson, D., Huebsch, E., Horton, D., Deaton, J., & Gentis, D. (2013). The oklahoma cyberinfrastructure initiative. In Proceedings of the conference on extreme science and engineering discovery environment: Gateway to discovery (70:1–70:6). XSEDE ’13. San Diego, California, USA: ACM. doi:10.1145/2484762.2484793. HDL: 11244/15455
: Nguyen, M. T. (2013). Minimizing energy consumption in random walk routing for wireless sensor networks utilizing compressed sensing. In 2013 8th international conference on system of systems engineering. IEEE. doi:10.1109/sysose.2013.6575283
: Nguyen, M. T. & Rahnavard, N. (2013). Cluster-based energy-eﬃcient data collection in wireless sensor networks utilizing compressive sensing. In MILCOM 2013 - 2013 IEEE military communications conference. IEEE. doi:10.1109/milcom.2013.289
: Nicholson, J. E. (2013). Methods of association for genome data with rare variants and a multinomial response (Doctoral dissertation, Oklahoma State University). HDL: 11244/10978
: Nof, S. Y., Cheng, G. J., Weiner, A. M., Chen, X. W., Bechar, A., Jones, M. G., Reed, C. B., Donmez, A., Weldon, T. D., Bermel, P., Bukkapatnam, S. T. S., Cheng, C., Kumara, S. R. T., Bement, A., Koubek, R., Bidanda, B., Shin, Y. C., Capponi, A., Lee, S., Lehto, M. R., Liu, A. L., Nohadani, O., Dantus, M., Lorraine, P. W., Nolte, D. D., Proctor, R. W., Sardesai, H. P., Shi, L., Wachs, J. P., & Zhang, X.-C. (2013). Laser and photonic systems integration: Emerging innovations and framework for research and education. Human Factors and Ergonomics in Manufacturing & Service Industries, 23(6), 483–516. doi:10.1002/hfm.20555
: Norouzzadeh, P., Myles, C. W., & Vashaee, D. (2013). Electronic, elastic, vibrational, and thermodynamic properties of type-VIII clathrates Ba₈Ga₁₆Sn₃₀ and Ba₈Al₁₆Sn₃₀ by ﬁrst principles. Journal of Applied Physics, 114(16), 163509. doi:10.1063/1.4826213
: Pham, P. & Guo, Y. (2013). A semiclassical study of cis-trans isomerization in HONO using an interpolating moving least-squares potential. The Journal of Chemical Physics, 138(14), 144304. doi:10.1063/1.4799270. PMID: 24981532
: Schonknecht, G., Chen, W.-H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Brautigam, A., Baker, B. J., Banﬁeld, J. F., Garavito, R. M., Carr, K., Wilkerson, C., Rensing, S. A., Gagneul, D., Dickenson, N. E., Oesterhelt, C., Lercher, M. J., & Weber, A. P. M. (2013). Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science, 339(6124), 1207–1210. doi:10.1126/science.1231707. PMID: 23471408
: Schrick, E. K., Forget, T. J., Roewe, K. D., Schrick, A. C., Moore, C. E., Golen, J. A., Rheingold, A. L., Materer, N. F., & Weinert, C. S. (2013). Substituent eﬀects in digermanes: Electrochemical, theoretical, and structural investigations. Organometallics, 32(7), 2245–2256. doi:10.1021/om400132z
: Schumacher, L. L., Love, B. C., Ferrell, M., DeSilva, U., Fernando, R., & Ritchey, J. W. (2013). Canine intestinal histoplasmosis containing hyphal forms. Journal of Veterinary Diagnostic Investigation, 25(2), 304–307. doi:10.1177/1040638713479604. PMID: 23512926
: Stobbe, A. (2013). Virus detection in a metagenomic sequence dataset: Methods and applications (Doctoral dissertation, Oklahoma State University). HDL: 11244/11047
: Stobbe, A. H., Daniels, J., Espindola, A. S., Verma, R., Melcher, U., Ochoa-Corona, F., Garzon, C., Fletcher, J., & Schneider, W. (2013). E-probe diagnostic nucleic acid analysis (EDNA): A theoretical approach for handling of next generation sequencing data for diagnostics. Journal of Microbiological Methods, 94(3), 356–366. doi:10.1016/j.mimet.2013.07.002. PMID: 23867249
: Stowe, M. & Kak, S. (2013). Neural network capacity for multilevel inputs. arXiv. doi:10.48550/ARXIV.1307.8104
: Stowe, M. D. (2013). Neural network capacity with delta learning and linear thresholds (Master’s thesis, Oklahoma State University). HDL: 11244/11190
: Wang, S. & Rahnavard, N. (2013). Binary compressive sensing via sum of l1-norm and l(inﬁnity)-norm regularization. In MILCOM 2013 - 2013 IEEE military communications conference. IEEE. doi:10.1109/milcom.2013.274
: Wasala, L., Talley, J. L., DeSilva, U., Fletcher, J., & Wayadande, A. (2013). Transfer of escherichia coli O157:H7 to spinach by house ﬂies, musca domestica (diptera: Muscidae). Phytopathology, 103(4), 373–380. doi:10.1094/phyto-09-12-0217-ﬁ. PMID: 23425236
: Youssef, N. H., Couger, M. B., Struchtemeyer, C. G., Liggenstoﬀer, A. S., Prade, R. A., Najar, F. Z., Atiyeh, H. K., Wilkins, M. R., & Elshahed, M. S. (2013). The genome of the anaerobic fungus orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader. Applied and Environmental Microbiology, 79(15), 4620–4634. doi:10.1128/aem.00821-13. HDL: 11244/301776

2012

: Allred, B. W. (2012). Fire-grazing interaction: An ecological process (Doctoral dissertation, Oklahoma State University). HDL: 11244/6841
: Cheng, C., Bukkapatnam, S. T., Raﬀ, L. M., Hagan, M., & Komanduri, R. (2012). Monte carlo simulation of carbon nanotube nucleation and growth using nonlinear dynamic predictions. Chemical Physics Letters, 530, 81–85. doi:10.1016/j.cplett.2012.01.067
: Cheng, C., Bukkapatnam, S. T., Raﬀ, L. M., & Komanduri, R. (2012). Towards control of carbon nanotube synthesis process using prediction-based fast monte carlo simulations. Journal of Manufacturing Systems, 31(4), 438–443. doi:10.1016/j.jmsy.2012.06.006
: Cheng, C., Bukkapatnam, S., Raﬀ, L., & Komanduri, R. (2012). Novel nanoinformatics methods for scaling up atomistic-scale simulation of carbon nanotube synthesis. IIE Annual Conference. Proceedings, 1–9. Retrieved from http://search.proquest.com/docview/1151086928/
: Davis, M. R., Rendina, E., Peterson, S. K., Lucas, E. A., Smith, B. J., & Clarke, S. L. (2012). Enhanced expression of lipogenic genes may contribute to hyperglycemia and alterations in plasma lipids in response to dietary iron deﬁciency. Genes & Nutrition, 7(3), 415–425. doi:10.1007/s12263-011-0278-y. PMID: 22228222
: Ding, T. (2012). The analysis of the diversity and distribution of leaf endophytic bacterial communities (Doctoral dissertation, Oklahoma State University). HDL: 11244/6837
: Espindola, A., Garzon, C., Fletcher, J., & Schneider, W. (2012). Validation of EDNA, a newly developed bioinformatics tool, for the detection of pythium ultimum from metagenomic samples. In Abstracts submitted for presentation at the 2012 APS annual meeting (7S, S4.1–S4.145). Scientiﬁc Societies. doi:10.1094/phyto-102-7-s4.1
: Fernando, B. R., Hermansky, S., Kim, H., Bible, M. R., Carter, S. D., & DeSilva, U. (2012). Impact of diet on swine fecal microbiome. In Proceedings of the international conference on the status of plant and animal genome research. Plant and Animal XX Conference, San Diego, CA.
: Francisco, C. A., Mermin, J., & Schweig, J. (2012). Generalizing the borel property. Journal of the London Mathematical Society, 87(3), 724–740. doi:10.1112/jlms/jds071
: Handa, S. & Slaughter, L. M. (2012). Enantioselective alkynylbenzaldehyde cyclizations catalyzed by chiral gold(i) acyclic diaminocarbene complexes containing weak Au-arene interactions. Angewandte Chemie, 124(12), 2966–2969. doi:10.1002/ange.201107789
: Mahdavi Pajouh, F. (2012). Polyhedral combinatorics, complexity and algorithms for k-clubs in graphs (Doctoral dissertation, Oklahoma State University). HDL: 11244/7774
: Pajouh, F. M., Miao, Z., & Balasundaram, B. (2012). A branch-and-bound approach for maximum quasi-cliques. Annals of Operations Research, 216(1), 145–161. doi:10.1007/s10479-012-1242-y
: Ray, A., Saykhedkar, S., Ayoubi-Canaan, P., Hartson, S. D., Prade, R., & Mort, A. J. (2012). Phanerochaete chrysosporium produces a diverse array of extracellular enzymes when grown on sorghum. Applied Microbiology and Biotechnology, 93(5), 2075–2089. doi:10.1007/s00253-012-3907-5. PMID: 22290653
: Sattar, S., Addo-Quaye, C., Song, Y., Anstead, J. A., Sunkar, R., & Thompson, G. A. (2012). Expression of small RNA in aphis gossypii and its potential role in the resistance interaction with melon. PLoS ONE, 7(11), e48579. doi:10.1371/journal.pone.0048579. PMID: 23173035
: Sattar, S., Song, Y., Anstead, J. A., Sunkar, R., & Thompson, G. A. (2012). Cucumis melo MicroRNA expression proﬁle during aphid herbivory in a resistant and susceptible interaction. Molecular Plant-Microbe Interactions, 25(6), 839–848. doi:10.1094/mpmi-09-11-0252. PMID: 22375710
: Saykhedkar, S., Ray, A., Ayoubi-Canaan, P., Hartson, S. D., Prade, R., & Mort, A. J. (2012). A time course analysis of the extracellular proteome of aspergillus nidulans growing on sorghum stover. Biotechnology for Biofuels, 5(1), 52. doi:10.1186/1754-6834-5-52. HDL: 11244/302069
: Schneider, W. L., Stobbe, A. H., Daniels, J., Espindola, A. S., Verma, R., Blagden, T., Fletcher, J., Ochoa-Corona, F., Garzon, C., & Hoyt, P. R. (2012). Next-generation diagnostics: Eliminating the excessive sequence processing associated with next-generation sequencing using EDNA. In Abstracts of special session presentations at the 2012 APS annual meeting (Vol. 102, 7S, S4.146–S4.167). Scientiﬁc Societies. doi:10.1094/phyto-102-7-s4.146
: Stobbe, A., Melcher, U. K., Fletcher, J., & Schneider, W. L. (2012). Validation of a unique sequence-based detection of plant pathogens using next-generation sequence data. In Abstracts submitted for presentation at the 2012 APS annual meeting (Vol. 102, 7S, S4.1–S4.145). Scientiﬁc Societies. doi:10.1094/phyto-102-7-s4.1
: Stobbe, A., Melcher, U. K., & Schneider, W. L. (2012). Designing and validation of e-probes to strain type plum pox virus. In Abstracts submitted for presentation at the 2012 APS annual meeting (Vol. 102, 7S, S4.1–S4.145). Scientiﬁc Societies. doi:10.1094/phyto-102-7-s4.1
: Verma, R. & Melcher, U. (2012). A support vector machine based method to distinguish proteobacterial proteins from eukaryotic plant proteins. BMC Bioinformatics, 13(S15). doi:10.1186/1471-2105-13-s15-s9. HDL: 11244/302078
: Yerramsetty, K. M., Neely, B. J., & Gasem, K. A. (2012). A non-linear structure–property model for octanol–water partition coeﬃcient. Fluid Phase Equilibria, 332, 85–93. doi:10.1016/j.ﬂuid.2012.07.001. PMID: 23185102
: Zhu, L., Chen, S., Jiang, Z., Zhang, Z., Ku, H.-C., Li, X., McCann, M., Harris, S., Lust, G., Jones, P., & Todhunter, R. (2012). Identiﬁcation of quantitative trait loci for canine hip dysplasia by two sequential multipoint linkage analyses. Journal of Applied Statistics, 39(8), 1719–1731. doi:10.1080/02664763.2012.673121

2011

: Allred, B. W., Fuhlendorf, S. D., Engle, D. M., & Elmore, R. D. (2011). Ungulate preference for burned patches reveals strength of ﬁre-grazing interaction. Ecology and Evolution, 1(2), 132–144. doi:10.1002/ece3.12. HDL: 11244/321254
: Allred, B. W., Fuhlendorf, S. D., & Hamilton, R. G. (2011). The role of herbivores in great plains conservation: Comparative ecology of bison and cattle. Ecosphere, 2(3), art26. doi:10.1890/es10-00152.1
: Constantin, P., Lai, M.-C., Sharma, R., Tseng, Y.-H., & Wu, J. (2011). New numerical results for the surface quasi-geostrophic equation. Journal of Scientiﬁc Computing, 50(1), 1–28. doi:10.1007/s10915-011-9471-9
: Daniels, J., Stobbe, T., Espindola, A., Schneider, W., Fletcher, J., & Ochoa-Corona, F. (2011). In silico simulation of massively parallel sequencing as a diagnostic tool for bacterial phytopathogens. In Phytopathology (Vol. 101, 6, S41–S41). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.
: Dasari, T. (2011). Sensing and actuating tasks as services and its quality of services in large clustered environments (Master’s thesis, Oklahoma State University). HDL: 11244/8142
: Espindola, A., Stobbe, A., Daniels, J., Fletcher, J., Garzon, C., & Schneider, W. (2011). Design and validation of queries for the detection of phytophthora ramorum in simulated metagenomes. In Phytopathology (Vol. 101, 6, S50–S50). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.
: Fernando, B. R. & DeSilva, U. (2011). Phage biome of the bovine rumen. In Proceedings of the 2011 international conference on the status of plant and animal genome research. Plant and Animal XIX Conference, San Diego, CA.
: Francisco, C. A., Mermin, J., & Schweig, J. (2011). Borel generators. Journal of Algebra, 332(1), 522–542. doi:10.1016/j.jalgebra.2010.09.042
: Friedenberg, S. G., Zhu, L., Zhang, Z., van den Berg Foels, W., Schweitzer, P. A., Wang, W., Fisher, P. J., Dykes, N. L., Corey, E., Vernier-Singer, M., Jung, S.-W., Sheng, X., Hunter, L. S., McDonough, S. P., Lust, G., Bliss, S. P., Krotscheck, U., Gunn, T. M., & Todhunter, R. J. (2011). Evaluation of a ﬁbrillin 2 gene haplotype associated with hip dysplasia and incipient osteoarthritis in dogs. American Journal of Veterinary Research, 72(4), 530–540. doi:10.2460/ajvr.72.4.530. PMID: 21453155
: Harris, A. J. & Xiang, Q.-Y. (2011). The Bayes–DIVA method and its application for testing biogeographic origins of inter-continental disjunct endemics. In Proceedings of the 2011 international botanical congress.
: Ku, H.-C. & Zhu, L. (2011). Bayesian regression analysis of quantitative trait with correlated phenotypic data. In JSM proceedings. American Statistical Association, Alexandria, VA.
: Link-Pérez, M. A., Watson, L. E., & Hickey, R. J. (2011). Redeﬁnition of adiantopsis fée (pteridaceae): Systematics, diversiﬁcation, and biogeography. TAXON, 60(5), 1255–1268. doi:10.1002/tax.605003
: PELSER, P. B., ABBOTT, R. J., COMES, H. P., MILTON, J. J., MÖLLER, M., LOOSELEY, M. E., CRON, G. V., BARCELONA, J. F., KENNEDY, A. H., WATSON, L. E., BARONE, R., HERNÁNDEZ, F., & KADEREIT, J. W. (2011). The genetic ghost of an invasion past: Colonization and extinction revealed by historical hybridization in Senecio. Molecular Ecology, 21(2), 369–387. doi:10.1111/j.1365-294x.2011.05399.x. PMID: 22171696
: Stobbe, A. H. [A. H.], Melcher, U., Palmer, M. W., Roossinck, M. J., & Shen, G. (2011). Co-divergence and host-switching in the evolution of tobamoviruses. Journal of General Virology, 93(2), 408–418. doi:10.1099/vir.0.034280-0. PMID: 22049092
: Stobbe, A., Daniels, J., Espindola, A., Schneider, W., Fletcher, J., & Melcher, U. (2011). Use of massively parallel sequencing as a diagnostic tool. In Phytopathology (Vol. 101, 6, S171–S172). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.
: Struchtemeyer, C. G., Davis, J. P., & Elshahed, M. S. (2011). Inﬂuence of the drilling mud formulation process on the bacterial communities in thermogenic natural gas wells of the barnett shale. Applied and Environmental Microbiology, 77(14), 4744–4753. doi:10.1128/aem.00233-11. HDL: 11244/301609
: Youssef, N. H., Ashlock-Savage, K. N., & Elshahed, M. S. (2011). Phylogenetic diversities and community structure of members of the extremely halophilic archaea (order halobacteriales) in multiple saline sediment habitats. Applied and Environmental Microbiology, 78(5), 1332–1344. doi:10.1128/aem.07420-11. HDL: 11244/301775
: Zhu, L., Feng, F., & Bustamante, C. D. (2011). A regression-based approach for estimating recombination rate from population genomic data. In Proceedings of the international conference on bioinformatics & computational biology (biocomp) (p. 1). The Steering Committee of The World Congress in Computer Science, Computer ….

2010

: Apon, A., Pummill, J., & Brunson, D. (2010). Community funding models for computational resources. TigerPrints. Retrieved from https://tigerprints.clemson.edu/computing_pubs/15
: Bukkapatnam, S. T. S. & Cheng, C. (2010). Forecasting the evolution of nonlinear and nonstationary systems using recurrence-based local gaussian process models. Physical Review E, 82(5). doi:10.1103/physreve.82.056206. PMID: 21230562
: Liggenstoﬀer, A. S., Youssef, N. H., Couger, M. B., & Elshahed, M. S. (2010). Phylogenetic diversity and community structure of anaerobic gut fungi (phylum neocallimastigomycota) in ruminant and non-ruminant herbivores. The ISME Journal, 4(10), 1225–1235. doi:10.1038/ismej.2010.49. PMID: 20410935
: Monismith, J., David R. (2010). Uses of the slime mold lifecycle as a model for numerical optimization (Doctoral dissertation, Oklahoma State University). HDL: 11244/6493
: Youssef, N. H., Couger, M. B., & Elshahed, M. S. (2010). Fine-scale bacterial beta diversity within a complex ecosystem (zodletone spring, OK, USA): The role of the rare biosphere. PLoS ONE, 5(8), e12414. doi:10.1371/journal.pone.0012414. PMID: 20865128

2009

: Fu, B. (2009). Simulation of microstructural evolution of cross-linked templated silica-aerogels under compression (Master’s thesis, Oklahoma State University). HDL: 11244/9930
: HARRIS, A. & XIANG, Q.-Y. J. (2009). Estimating ancestral distributions of lineages with uncertain sister groups: A statistical approach to dispersal-vicariance analysis and a case using Aesculus L. (sapindaceae) including fossils. Journal of Systematics and Evolution, 47(5), 349–368. doi:10.1111/j.1759-6831.2009.00044.x
: Zhang, W. & Guo, Y. (2009). First-principles study of crystal structures of NO⁺NO₃^- under pressure. Solid State Communications, 149(33-34), 1342–1346. doi:10.1016/j.ssc.2009.05.027

2008

: Andreason, S., Schneider, W., Davis, R., & Wayadande, A. (2008). E-probe diagnostic nucleic acid assay (EDNA) detection of spiroplasma kunkelli in gray lawn leafhopper, Exitianus exitiosu, (uhl.), transcriptome sequencing dataset. In Proceedings of the 2008 annual meeting of the entomological society of america.

2007

: Morris, T. L. (2007). Permutation test for the structure of a covariance matrix (Doctoral dissertation, Oklahoma State University). HDL: 11244/7023