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2024

Duha, A. & Bilitewski, T. (2024). Two-mode squeezing and entanglement dynamics for power-law interactions in two-dimensional bi-layer spin œ system. Bulletin of the American Physical Society.

Duha, A., Stoltz, K., DeSilva, C. R., & Borunda, M. F. (2024). Investigating the catalytic properties of co-doped ZnO for fischer-tropsch synthesis. Bulletin of the American Physical Society.

Lawal, M. M., Roy, P., & McCullagh, M. (2024). Role of ATP hydrolysis and product release in the translocation mechanism of SARS-CoV-2 NSP13. The Journal of Physical Chemistry B, 128(2), 492–503. doi:10.1021/acs.jpcb.3c06714. PMID: 38175211

Leicht, A. F., Mahdi, M. A., McNamara, K., Noori, H., & Zhao, W. (2024). Design, manufacturing, and experiments of additive manufactured stiffened thin-walled plates. In Aiaa scitech 2024 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2024-2077

Meili, C. H., TagElDein, M. A., Jones, A. L., Moon, C. D., Andrews, C., Kirk, M. R., Janssen, P. H., J. Yeoman, C., Grace, S., Borgogna, J.-L. C., Foote, A. P., Nagy, Y. I., Kashef, M. T., Yassin, A. S., Elshahed, M. S., & Youssef, N. H. (2024). Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores. Applied and Environmental Microbiology. doi:10.1128/aem.01492-23. PMID: 38299813

Oz, F. & Kara, K. (2024). Hypersonic boundary layer stabilization via fully resolved local metasurface structures. In Aiaa scitech 2024 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2024-1102

Poudel, P., Alderman, P. D., Ochsner, T. E., & Lollato, R. P. (2024). A parsimonious bayesian crop growth model for water-limited winter wheat. Computers and Electronics in Agriculture, 217, 108618. doi:10.1016/j.compag.2024.108618

Stoltz, K. R. & Borunda, M. F. (2024). Benchmarking DFT and supervised machine learning: An organic semiconducting polymer investigation. The Journal of Physical Chemistry A. doi:10.1021/acs.jpca.3c04905

Vuppala, R. K. S. S., Krawczyk, Z., Paul, R., & Kara, K. (2024). Modeling advanced air mobility aircraft in data-driven reduced order realistic urban winds. Scientific Reports, 14(1). doi:10.1038/s41598-023-50719-8. PMID: 38172566

Zhang, J., Ragab, T., Wang, M., Wang, W., Zhu, Y., Zhang, H., Wang, X., & Jiang, K. (2024). Effect of graphene nanoplatelets relative size and polyethylene chain length on the enhancement of thermal conductivity of their composite. International Journal of Thermal Sciences, 195, 108617. doi:10.1016/j.ijthermalsci.2023.108617

2023

Abraham, R. M. & Gonçalves, D. (2023). Boosting new physics searches in ttZ and tZj production with angular moments. The European Physical Journal C, 83(10). doi:10.1140/epjc/s10052-023-12148-9

Acquah, F. A. & Mooers, B. H. M. (2023). Targeting RNA structure to inhibit editing in trypanosomes. International Journal of Molecular Sciences, 24(12), 10110. doi:10.3390/ijms241210110

Ahsan, N., Fornelli, L., Najar, F. Z., Gamagedara, S., Hossan, M. R., Rao, R. S. P., Punyamurtula, U., Bauer, A., Yang, Z., Foster, S. B., & Kane, M. A. (2023). Proteomics evaluation of five economical commercial abundant protein depletion kits for enrichment of diseases-specific biomarkers from blood serum. PROTEOMICS. doi:10.1002/pmic.202300150

Alghamdi, K. I., Bach, C. K., Spitler, J. D., & Istiaque, F. (2023). Modeling, simulating, and validating a novel three-fluid heat exchanger (TriCoil^TM) for a residential heating and air-conditioning system integrating water-based thermal energy storage. Energy and Buildings, 113545. doi:10.1016/j.enbuild.2023.113545

Arias, H. R., Pierce, S. R., Germann, A. L., Xu, S. Q., Ortells, M. O., Sakamoto, S., Manetti, D., Romanelli, M. N., Hamachi, I., & Akk, G. (2023). Chemical, pharmacological, and structural characterization of novel acrylamide-derived modulators of the GABA_A receptor. Molecular Pharmacology, MOLPHARM–AR–2023–000692. doi:10.1124/molpharm.123.000692. PMID: 37316350

Banerjee, D., Popy, D. A., Leininger, B. C., Creason, T. D., Mapara, V. N., Furis, M., Borunda, M. F., & Saparov, B. (2023). Zero-dimensional broadband yellow light emitter (TMS)₃Cu₂I₅ for latent fingerprint detection and solid-state lighting. ACS Applied Materials & Interfaces. doi:10.1021/acsami.3c04077. PMID: 37307198

Barman, R. K., Dev, P. S. B., & Thapa, A. (2023). Constraining lepton flavor violating higgs couplings at the HL-LHC in the vector boson fusion channel. Physical Review D, 107(7). doi:10.1103/physrevd.107.075018

Bernard, D. N., Narayanan, C., Hempel, T., Bafna, K., Bhojane, P. P., Létourneau, M., Howell, E. E., Agarwal, P. K., & Doucet, N. (2023). Conformational exchange divergence along the evolutionary pathway of eosinophil-associated ribonucleases. Structure. doi:10.1016/j.str.2022.12.011. PMID: 36649708

Calvert, C. T. & Schnitzler, E. G. (2023). Light absorption by cinnamaldehyde constituents of biomass burning organic aerosol modeled using time-dependent density functional theory. ACS Earth and Space Chemistry. doi:10.1021/acsearthspacechem.2c00344

Carrera Lopez, D. A. (2023). Detection of the select agent Coniothyrium glycines, causal pathogen of red leaf blotch of soybeans using high-throughput sequencing data (Master’s thesis, Oklahoma State University). HDL: 11244/338902

Dcruz, R. & Babu, K. S. (2023). Resolving W boson mass shift and CKM unitarity violation in left-right symmetric models with a universal seesaw mechanism. Physical Review D, 108(9). doi:10.1103/physrevd.108.095011

Dhakal, K., Kakani, V. G., Wagle, P., & Sharma, S. (2023). Regional switchgrass carbon sequestration estimates from high-frequency eddy covariance and mesonet observations. Agrosystems, Geosciences & Environment, 6(1). doi:10.1002/agg2.20328

Dhakal, P., Gassaway, W., & Shah, J. K. (2023). Mapping the frontier orbital energies of imidazolium-based cations using machine learning. The Journal of Chemical Physics, 159(6). doi:10.1063/5.0155775

Gonçalves, D., Kaladharan, A., & Wu, Y. (2023). Gravitational waves, bubble profile, and baryon asymmetry in the complex 2HDM. Physical Review D, 108(7). doi:10.1103/physrevd.108.075010

Gonçalves, D., Kaladharan, A., & Wu, Y. (2023). Resonant top pair searches at the LHC: A window to the electroweak phase transition. Physical Review D, 107(7). doi:10.1103/physrevd.107.075040

Graf Grachet, N., Proaño Cuenca, F., Garzon, C., Wu, Y., Marek, S. M., & Walker, N. (2023). Draft genome sequences of eleven isolates of ophiosphaerella spp., the causal agents of several turfgrass diseases including spring dead spot of bermudagrass and necrotic ring spot of kentucky bluegrass. PhytoFrontiers™. doi:10.1094/phytofr-02-23-0019-a

Hu, H., Swift, A., Mauro-Herrera, M., Borrone, J., Borja, G., & Doust, A. N. (2023). Transcriptomic analysis of seed development in paysonia auriculata (brassicaceae) identifies genes involved in hydroxy fatty acid biosynthesis. Frontiers in Plant Science, 13. doi:10.3389/fpls.2022.1079146. PMID: 36714715

Ishola, O. A. (2023). A new stochastic pore-scale simulation and machine learning approach to predicting permeability and tortuosity of heterogeneous porous media (Doctoral dissertation, Oklahoma State University). HDL: 11244/339014

Islam, M. A. (2023). Structural configuration of amorphous silica surface with different terminating groups using classical and ab initio molecular dynamics (Master’s thesis, Arkansas State University). Retrieved from https://www.proquest.com/docview/2856701269

Islam, M. R. & Feng, Y. (2023). Achieving targeted delivery of chemotherapeutic particles to small airway tumors via pulmonary route using endotracheal catheters: A CFPD study. Pharmaceuticals, 16(2), 158. doi:10.3390/ph16020158. PMID: 37259309

Judkins, M. E., Roemer, G. W., Millsap, B. A., Barnes, J. G., Bedrosian, B. E., Clarke, S. L., Domenech, R., Herring, G., Lamont, M., Smith, B. W., Stahlecker, D. W., Stuber, M. J., Warren, W. C., & Bussche, R. A. V. D. (2023). A 37 k SNP array for the management and conservation of golden eagles (aquila chrysaetos). Conservation Genetics. doi:10.1007/s10592-023-01508-3

Jurko, D. M. (2023). Determination of the quantity of earth’s gravity imparted on particles in a rotating cylinder fluid regime based on particle density and rotation speed (Master’s thesis, Oklahoma State University). HDL: 11244/338930

Lee, E., McLeod, M. J., Redzic, J. S., Marcolin, B., Thorne, R. E., Agarwal, P., & Eisenmesser, E. Z. (2023). Identifying structural and dynamic changes during the biliverdin reductase b catalytic cycle. Frontiers in Molecular Biosciences, 10. doi:10.3389/fmolb.2023.1244587. PMID: 37645217

Liu, Y., Erbilgin, N., Cappa, E. P., Chen, C., Ratcliffe, B., Wei, X., Klutsch, J. G., Ullah, A., Azcona, J. S., Thomas, B. R., & El-Kassaby, Y. A. (2023). Decoupling of height growth and drought or pest resistance tradeoffs is revealed through multiple common-garden experiments of lodgepole pine. Evolution. doi:10.1093/evolut/qpad004. PMID: 36637132

LoPresti, E. F., Pan, V. S., Girvin, C., Barber, G., Jaeger, S., & Orrock, J. L. (2023). Sandy seeds: Armor or invisibility cloak? mucilage-bound sand physically protects seeds from rodents and invertebrates. Journal of Ecology. doi:10.1111/1365-2745.14077

Lu, Y., Miao, Z., Sahraeian, P., & Balasundaram, B. (2023). On atomic cliques in temporal graphs. Optimization Letters. doi:10.1007/s11590-023-01975-0

Martinez-Miranda, L. & Borunda, M. (2023). The effect of the buried surface on the structure and the transport of charges in liquid crystal organic photovoltaics. Bulletin of the American Physical Society.

Meili, C. (2023). Exploring the diversity, community structure, and evolutionary drivers of anaerobic gut fungi in herbivorous mammals (Master’s thesis, Oklahoma State University). HDL: 11244/338943

Meili, C. H., Jones, A. L., Arreola, A. X., Habel, J., Pratt, C. J., Hanafy, R. A., Wang, Y., Yassin, A. S., TagElDein, M. A., Moon, C. D., Janssen, P. H., Shrestha, M., Rajbhandari, P., Nagler, M., Vinzelj, J. M., Podmirseg, S. M., Stajich, J. E., Goetsch, A. L., Hayes, J., Young, D., Fliegerova, K., Grilli, D. J., Vodička, R., Moniello, G., Mattiello, S., Kashef, M. T., Nagy, Y. I., Edwards, J. A., Dagar, S. S., Foote, A. P., Youssef, N. H., & Elshahed, M. S. (2023). Patterns and determinants of the global herbivorous mycobiome. Nature Communications, 14(1). doi:10.1038/s41467-023-39508-z

Najar, F. Z., Linde, E., Murphy, C. L., Borin, V. A., Wang, H., Haider, S., & Agarwal, P. K. (2023). Future COVID19 surges prediction based on SARS-CoV-2 mutations surveillance. eLife, 12. doi:10.7554/elife.82980. PMID: 36655992

Oz, F. & Kara, K. (2023a). Hypersonic boundary-layer stability over a cone with combined local cooling and local metasurface treatment. In AIAA AVIATION 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-3419

Oz, F. & Kara, K. (2023b). Hypersonic boundary-layer stability with local cooling and local metasurface treatment. In AIAA SCITECH 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-0818

Park, J. H., Prasad, V., Newsom, S., Najar, F., & Rajan, R. (2023). Idmotif: An interactive motif identification in protein sequences. IEEE Computer Graphics and Applications, 1–13. doi:10.1109/mcg.2023.3345742

Pawar, S., San, O., Rasheed, A., & Vedula, P. (2023). Frame invariant neural network closures for kraichnan turbulence. Physica A: Statistical Mechanics and its Applications, 609, 128327. doi:10.1016/j.physa.2022.128327

Pierce, S. R., Germann, A. L., Xu, S. Q., Menon, S. L., Ortells, M. O., Arias, H. R., & Akk, G. (2023). Mutational analysis of anesthetic binding sites and their effects on GABA_A receptor activation and modulation by positive allosteric modulators of the α7 nicotinic receptor. Biomolecules, 13(4), 698. doi:10.3390/biom13040698. PMID: 37189445

Robb, C. S., Vuppala, R. K. S. S., Paul, R. C., & Kara, K. (2023). Flight dynamics of a flying wing aircraft featuring the bell spanload. In AIAA SCITECH 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-2610

Robb, C. & Paul, R. (2023). Aerodynamic modeling of a flying wing featuring ludwig prandtl’s bell spanload. Aerospace, 10(7), 613. doi:10.3390/aerospace10070613

Schoch, T. D. & Weaver, J. D. (2023). Efforts toward synthetic photosynthesis: Visible light-driven CO₂ valorization. Journal of the American Chemical Society. doi:10.1021/jacs.3c04837. PMID: 37390455

Schoch, T., Wyneken, H., Despain, M., & Weaver, J. D. (2023). Probing the visible light driven geometrical isomerization of 4-arylbut-3-ene-2-amines. ChemCatChem. doi:10.1002/cctc.202301002

Shaheen, N., Najar, F. Z., Chowdhury, U. F., Chowdhury, M. A. A., Reza, R. N., Halima, O., Foster, S. B., Khan, H., Islam, M. R., & Ahsan, N. (2023). Muscle proteome profile and potential allergens of premature hilsa shad (Tenualosa ilisha). Journal of Food Composition and Analysis, 123, 105641. doi:10.1016/j.jfca.2023.105641

Tae, H.-S., Ortells, M. O., Tekarli, B. J., Manetti, D., Romanelli, M. N., McIntosh, J. M., Adams, D. J., & Arias, H. R. (2023). DM506 (3-methyl-1,2,3,4,5,6-hexahydroazepino[4,5-b]indole fumarate), a novel derivative of ibogamine, inhibits α7 and α9α10 nicotinic acetylcholine receptors by different allosteric mechanisms. ACS Chemical Neuroscience. doi:10.1021/acschemneuro.3c00212. PMID: 37386821

Teye‐Kau, J. H. G., Ayodele, M. J., & Pitre, S. P. (2023). Vitamin b₁₂‐photocatalyzed cyclopropanation of electron‐deficient alkenes using dichloromethane as the methylene source. Angewandte Chemie International Edition. doi:10.1002/anie.202316064. PMID: 38015966

Vuppala, R. K. S. S. & Kara, K. (2023). Deep learning for realistic wind field prediction in various urban morphologies for application to small unmanned aerial systems. In AIAA SCITECH 2023 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2023-1757

Wang, H., Rizvi, S. R., Dong, D., Lou, J., Wang, Q., Sopipong, W., Su, Y., Najar, F., Agarwal, P. K., Kozielski, F., & Haider, S. (2023). Emerging variants of SARS-CoV-2 NSP10 highlight strong functional conservation of its binding to two non-structural proteins, NSP14 and NSP16. eLife, 12. doi:10.7554/elife.87884

Welfer, G. A., Borin, V. A., Cortez, L. M., Opresko, P. L., Agarwal, P. K., & Freudenthal, B. D. (2023). Altered nucleotide insertion mechanisms of disease-associated TERT variants. Genes, 14(2), 281. doi:10.3390/genes14020281. PMID: 36833208

2022

Abraham, R. M., Gonçalves, D., Han, T., Leung, S. C. I., & Qin, H. (2022). Directly probing the higgs-top coupling at high scales. Physics Letters B, 825, 136839. doi:10.1016/j.physletb.2021.136839

Acquah, F. A. (2022). Targeting RNA substrates in the discovery of inhibitors of trypanosome mitochondria RNA editing (Doctoral dissertation). Retrieved from https://www.proquest.com/docview/2681958450

Aghayan, A. & Jaiswal, P. (2022). System and method for obtaining minimum-phase source-signatures from multi-channel multi-offset seismic data. WO/2022/098991. Oklahoma State University. Retrieved from https://patents.google.com/patent/WO2022098991A1/

Ahmed, S. E., Dabaghian, P. H., San, O., Bistrian, D. A., & Navon, I. M. (2022). Dynamic mode decomposition with core sketch. Physics of Fluids. doi:10.1063/5.0095163

Alam, M. & Kara, K. (2022a). Characterization of sweeping jet actuator flow field using DMD analysis. Bulletin of the American Physical Society.

Alam, M. & Kara, K. (2022b). The influence of exit nozzle geometry on sweeping jet actuator performance. Fluids, 7(2), 69. doi:10.3390/fluids7020069

Alam, M., Kara, K., & Alexander, A. (2022). Reduction of spanwise flow over a swept wing using an air curtain produced by rectangular slot. In AIAA AVIATION 2022 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2022-3296

Anderson, V. M., Wendt, K. L., Caughron, J. B., Matlock, H. P., Rangu, N., Najar, F. Z., Miller, A. N., Luttenton, M. R., & Cichewicz, R. H. (2022). Assessing microbial metabolic and biological diversity to inform natural product library assembly. Journal of Natural Products, 85(4), 1079–1088. doi:10.1021/acs.jnatprod.1c01197

Balasundaram, B., Borrero, J. S., & Pan, H. (2022). Graph signatures: Identification and optimization. European Journal of Operational Research, 296(3), 764–775. doi:10.1016/j.ejor.2021.03.051

Barman, R. K., Gonçalves, D., & Kling, F. (2022). Machine learning the higgs boson-top quark CP phase. Physical Review D, 105(3). doi:10.1103/physrevd.105.035023

Burba, C. M., Feightner, K., Liu, M., & Hawari, A. (2022). The effect of fluorinated solvents on the physicochemical properties, ionic association, and free volume of a prototypical solvate ionic liquid. ChemPhysChem. doi:10.1002/cphc.202100548

Cappa, E. P., Chen, C., Klutsch, J. G., Sebastian-Azcona, J., Ratcliffe, B., Wei, X., Ros, L. D., Ullah, A., Liu, Y., Benowicz, A., Sadoway, S., Mansfield, S. D., Erbilgin, N., Thomas, B. R., & El-Kassaby, Y. A. (2022). Multiple-trait analyses improved the accuracy of genomic prediction and the power of genome-wide association of productivity and climate change-adaptive traits in lodgepole pine. BMC Genomics, 23(1). doi:10.1186/s12864-022-08747-7

Cappa, E. P., Klutsch, J. G., Sebastian-Azcona, J., Ratcliffe, B., Wei, X., Ros, L. D., Liu, Y., Chen, C., Benowicz, A., Sadoway, S., Mansfield, S. D., Erbilgin, N., Thomas, B. R., & El-Kassaby, Y. A. (2022). Integrating genomic information and productivity and climate-adaptability traits into a regional white spruce breeding program. PLOS ONE, 17(3), e0264549. doi:10.1371/journal.pone.0264549

Cappa, E. P., Ratcliffe, B., Chen, C., Thomas, B. R., Liu, Y., Klutsch, J., Wei, X., Azcona, J. S., Benowicz, A., Sadoway, S., Erbilgin, N., & El-Kassaby, Y. A. (2022). Improving lodgepole pine genomic evaluation using spatial correlation structure and SNP selection with single-step GBLUP. Heredity. doi:10.1038/s41437-022-00508-2. PMID: 35181761

Chen, S., Wang, Z., Yao, B., & Liu, T. (2022). Prediction of diabetic retinopathy using longitudinal electronic health records. In 2022 IEEE 18th international conference on automation science and engineering (CASE). IEEE. doi:10.1109/case49997.2022.9926605

Davidova, I. A., Duncan, K. E., Wiley, G., & Najar, F. Z. (2022). Desulfoferrobacter suflitae gen. nov., sp. nov., a novel sulphate-reducing bacterium in the deltaproteobacteria capable of autotrophic growth with hydrogen or elemental iron. International Journal of Systematic and Evolutionary Microbiology, 72(8). doi:10.1099/ijsem.0.005483

de Lima, C. H., Stolarski, D., & Wu, Y. (2022). Status of negative coupling modifiers for extended higgs sectors. Phys. Rev. D, 105, 035019. doi:10.1103/PhysRevD.105.035019

Dhakal, P. (2022). Leveraging atomistic simulations and machine learning for the design of ionic liquids as electrolytes for battery application (Doctoral dissertation, Oklahoma State University). HDL: 11244/337190

Dhakal, P., Das, S. K., & Shah, J. K. (2022). Revealing hydrogen bond dynamics between ion pairs in binary and reciprocal ionic liquid mixtures. Journal of Molecular Liquids, 368, 120515. doi:10.1016/j.molliq.2022.120515

Duncan, K. T., Elshahed, M. S., Sundstrom, K. D., Little, S. E., & Youssef, N. H. (2022). Influence of tick sex and geographic region on the microbiome of dermacentor variabilis collected from dogs and cats across the united states. Ticks and Tick-borne Diseases, 13(5), 102002. doi:10.1016/j.ttbdis.2022.102002

Espindola, A. S., Cardwell, K. F., Martin, F. N., Hoyt, P. R., Marek, S., Schneider, W., & Garzon, C. D. (2022). A step towards validation of high-throughput sequencing for the identification of plant pathogenic oomycetes. Phytopathology®. doi:10.1094/phyto-11-21-0454-r. PMID: 35345904

Gholizadeh, H., Friedman, M. S., McMillan, N. A., Hammond, W. M., Hassani, K., Sams, A. V., Charles, M. D., Garrett, D. R., Joshi, O., Hamilton, R. G., Fuhlendorf, S. D., Trowbridge, A. M., & Adams, H. D. (2022). Mapping invasive alien species in grassland ecosystems using airborne imaging spectroscopy and remotely observable vegetation functional traits. Remote Sensing of Environment, 271, 112887. doi:10.1016/j.rse.2022.112887

Ghosh, A. & Sarnak, P. (2022). Integral points on markoff type cubic surfaces. Inventiones mathematicae. doi:10.1007/s00222-022-01114-z

Gonçalves, D., Kaladharan, A., & Wu, Y. (2022). Electroweak phase transition in the 2HDM: Collider and gravitational wave complementarity. Physical Review D, 105(9). doi:10.1103/physrevd.105.095041

Halima, O., Najar, F. Z., Wahab, A., Gamagedara, S., Chowdhury, A. I., Foster, S. B., Shaheen, N., & Ahsan, N. (2022). Lentil allergens identification and quantification: An update from omics perspective. Food Chemistry: Molecular Sciences, 4, 100109. doi:10.1016/j.fochms.2022.100109

Hu, P., Cai, C., Yi, H., Zhao, J., Feng, Y., & Wang, Q. (2022). Aiding airway obstruction diagnosis with computational fluid dynamics and convolutional neural network: A new perspective and numerical case study. Journal of Fluids Engineering. doi:10.1115/1.4053651

Hu, X., Carver, B. F., El-Kassaby, Y. A., Zhu, L., & Chen, C. (2022). Weighted kernels improve multi-environment genomic prediction. Heredity. doi:10.1038/s41437-022-00582-6. PMID: 36522412

Ishola, O., Alexander, A., & Vilcáez, J. (2022). Statistical and neural network analysis of the relationship between the stochastic nature of pore connectivity and flow properties of heterogeneous rocks. Journal of Natural Gas Science and Engineering, 105, 104719. doi:10.1016/j.jngse.2022.104719

Ishola, O. & Vilcáez, J. (2022). Machine learning modeling of permeability in 3D heterogeneous porous media using a novel stochastic pore-scale simulation approach. Fuel, 321, 124044. doi:10.1016/j.fuel.2022.124044

Jing, G., Bai, H., George, J., Chakrabortty, A., & Sharma, P. K. (2022). Distributed cooperative multi-agent reinforcement learning with directed coordination graph. In 2022 american control conference (ACC). IEEE. doi:10.23919/acc53348.2022.9867152

Khanov, M. & Akbas, E. (2022). Approximating dense ReLU networks using linear regression. In KDD 2022 undergraduate consortium. ACM. Retrieved from https://www.kdd.org/kdd2022/papers/13_Maxim%20A%20Khanov.pdf

Landua, T. R., Vuppala, R. K. S. S., & Kara, K. (2022). Investigation of airflow around buildings using large eddy simulations for unmanned air systems applications. In AIAA SCITECH 2022 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2022-1688. HDL: 11244/335834

Lantz, E., Mokadem, R. E., Schoch, T., Fleske, T., & Weaver, J. D. (2022). A new twist for stork-danheiser products enabled by visible light mediated Trans-cyclohexene formation; access to acyclic distal enones. Chemical Science. doi:10.1039/d1sc03774a. PMID: 36093001

Li, B. & Feng, Y. (2022). In silico study to enhance delivery efficiency of charged nanoscale nasal spray aerosols to the olfactory region using external magnetic fields. Bioengineering, 9(1), 40. doi:10.3390/bioengineering9010040. PMID: 35049749

Lu, Y., Miao, Z. [Zhuqi], Sahraeian, P., & Balasundaram, B. (2022). On atomic cliques in temporal graphs. Optimization Online. Retrieved from https://optimization-online.org/?p=19935

Lu, Y., Salemi, H., Balasundaram, B., & Buchanan, A. (2022). On fault-tolerant low-diameter clusters in graphs. INFORMS Journal on Computing. doi:10.1287/ijoc.2022.1231

Miao, Z. [Zelong]. (2022). Immune signaling pathways and digestion-related proteins in the manduca sexta larvae (Doctoral dissertation, Oklahoma State University). HDL: 11244/337302

Oz, F., Goebel, T. E., Jewell, J. S., & Kara, K. (2022). Local wall cooling effects on hypersonic boundary-layer stability. Journal of Spacecraft and Rockets, 1–15. doi:10.2514/1.a35404

Oz, F. & Kara, K. (2022). Hypersonic boundary layer stability of local cooling strip and porous surface. Bulletin of the American Physical Society.

Pan, H., Balasundaram, B., & Borrero, J. (2022). A decomposition branch-and-cut algorithm for the maximum cross-graph k-club problem. OpenProceedings.org. doi:10.48786/INOC.2022.04

Pan, V. S., Girvin, C., & LoPresti, E. F. (2022). Anchorage by seed mucilage prevents seed dislodgement in high surface flow: A mechanistic investigation. Annals of Botany. doi:10.1093/aob/mcac045. PMID: 35325924

Poudel, P., Bello, N. M., Lollato, R. P., & Alderman, P. D. (2022). A hierarchical bayesian approach to dynamic ordinary differential equations modeling for repeated measures data on wheat growth. Field Crops Research, 283, 108549. doi:10.1016/j.fcr.2022.108549

Proaño Cuenca, F., Espı́ndola, A. S., & Garzon, C. (2022). Detection of phytophthora, pythium, globisporangium, hyaloperonospora and plasmopara species in high-throughput sequencing data by in silico and in vitro analysis using microbe finder (MiFi®). PhytoFrontiers^TM. doi:10.1094/phytofr-04-22-0039-fi

Proaño Cuenca, F., Lopez, D. A. C., Luster, D. G., Zeller, K. A., & Cardwell, K. (2022). Genome sequence resources for five isolates of coniothyrium glycines, causal pathogen of red leaf blotch of soybeans. PhytoFrontiers^TM. doi:10.1094/phytofr-10-22-0113-a

Rajbanshi, B. & Guruacharya, A. (2022). Panama: An open-source educational app for ion channel biophysics simulation. Frontiers in Neuroinformatics, 16. doi:10.3389/fninf.2022.813940. PMID: 35356446

Schröder, G. C., O’Dell, W. B., Webb, S. P., Agarwal, P. K., & Meilleur, F. (2022). Capture of activated dioxygen intermediates at the copper-active site of a lytic polysaccharide monooxygenase. Chemical Science. doi:10.1039/d2sc05031e. PMID: 36507176

Scott, D. (2022). Adaptive streaming discriminant analysis regularization, error rate estimation, and semi-supervised learning (Doctoral dissertation, Oklahoma State University). HDL: 11244/337086

Secka, J., Pal, A., Acquah, F. A., Mooers, B. H. M., Karki, A. B., Mahjoub, D., Fakhr, M. K., Wallace, D. R., Okada, T., Toyooka, N., Kuta, A., Koduri, N., Herndon, D., Roberts, K. P., Wang, Z., Hileman, B., Rajagopal, N., & Hussaini, S. R. (2022). Coupling of acceptor-substituted diazo compounds and tertiary thioamides: Synthesis of enamino carbonyl compounds and their pharmacological evaluation. RSC Advances, 12(30), 19431–19444. doi:10.1039/d2ra02415b. PMID: 35865562

Shimizu, K., de Freitas, A. A., & Burba, C. M. (2022). Cation-anion and cation-cation interactions in mixtures of hydroxy-functionalized and aprotic ionic liquids. Journal of Ionic Liquids, 100022. doi:10.1016/j.jil.2022.100022

Shumaker, F. A. & Weinert, C. S. (2022). Absorbance and emission studies in solution and the solid state and band gap determination of Prⁱ₃Ge(GePh₂)₄GePrⁱ₃. Main Group Chemistry, 1–12. doi:10.3233/mgc-220100

Silva Lara, I. (2022). Role of dietary zinc in shaping the gastrointestinal microbiota in nursery pigs (Doctoral dissertation, Oklahoma State University). HDL: 11244/337323

Spitler, J. D. & West, T. N. (2022). Approximate g-functions for selection of borehole field configurations used with ground-source heat pump systems. In European geothermal congress. HDL: 11244/336597

Spitler, J., West, T., Liu, X., & Borshon, I. (2022). Open library of g-functions for 34,321 configurations. In Proceedings of the IGSHPA research track 2022. International Ground Source Heat Pump Association. doi:10.22488/okstate.22.000040

Totty, C. D. (2022). Computational fluid dynamics study for stability analysis of an unmanned aircraft mass simulator with rocket-assisted take-off (Master’s thesis, Oklahoma State University). HDL: 11244/337239

Vuppala, R. K. S. S. [Rohit K S S] & Kara, K. (2022). Wind field prediction in urban spaces for small unmanned aerial systems using convolutional autoencoders. In AIAA AVIATION 2022 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2022-3605

Vuppala, R. K. S. S. [Rohit K. S. S.] & Kara, K. (2022). A non-intrusive reduced order model using deep learning for realistic wind data generation for small unmanned aerial systems in urban spaces. AIP Advances, 12(8), 085020. doi:10.1063/5.0098835

Vuppala, R. K. S. S. [Rohit Kameshwara Sampath Sai] & Kara, K. (2022). Physics informed neural network model for wind field prediction in urban spaces for small unmanned aerial systems. In Aps division of fluid dynamics meeting abstracts. APS Meeting Abstracts.

Weaver, T. M., Click, T. H., Khoang, T. H., Washington, M. T., Agarwal, P. K., & Freudenthal, B. D. (2022). Mechanism of nucleotide discrimination by the translesion synthesis polymerase rev1. Nature Communications, 13(1). doi:10.1038/s41467-022-30577-0. PMID: 35610266

Xie, J. & Yao, B. (2022). Physics-constrained deep active learning for spatiotemporal modeling of cardiac electrodynamics. Computers in Biology and Medicine, 105586. doi:10.1016/j.compbiomed.2022.105586. PMID: 35751197

Yadav, A. (2022). Exploring environmental adaptations and habitat preferences in three microbial lineages using comparative (meta)genomic approaches (Doctoral dissertation, Oklahoma State University). HDL: 11244/337886

Yukihara, E., Christensen, J., & Togno, M. (2022). Demonstration of an optically stimulated luminescence (OSL) material with reduced quenching for proton therapy dosimetry: MgB₄O₇:Ce,Li. Radiation Measurements, 152, 106721. doi:10.1016/j.radmeas.2022.106721

Zhao, W. & Kapania, R. K. (2022). Buckling analysis and optimization of stiffened variable angle tow laminates with a cutout considering manufacturing constraints. Journal of Composites Science, 6(3), 80. doi:10.3390/jcs6030080

2021

Acquah, F. A., Paramel, M., Kuta, A., Hussaini, S. R., Wallace, D. R., & Mooers, B. H. M. (2021). Simulations of promising indolizidine—α6-β2 nicotinic acetylcholine receptor complexes. International Journal of Molecular Sciences, 22(15), 7934. doi:10.3390/ijms22157934. PMID: 34360698

ALAM, M., Marshall, T., & Kara, K. (2021). Effects of exit nozzle geometric parameters on sweeping jet actuator performance. Bulletin of the American Physical Society.

Alderman, P. D. (2021). Parallel gridded simulation framework for DSSAT-CSM (version 4.7.5.21) using MPI and NetCDF. 14(10), 6541–6569. doi:10.5194/gmd-14-6541-2021

Bai, H., Bhar, K., George, J., & Busart, C. (2021). Distributed bayesian parameter inference for physics-informed neural networks. In 2021 60th IEEE conference on decision and control (CDC). IEEE. doi:10.1109/cdc45484.2021.9683353

Bhandari, D. (2021). Molecular dynamics study of protein mortalin and its mutants with anti-cancer agents flex hets (Doctoral dissertation, Oklahoma State University). HDL: 11244/333785

Chaudhary, B. P. [Bharat P], Zoetewey, D. L., McCullagh, M. J., & Mohanty, S. (2021). NMR and MD simulations reveal the impact of the V23D mutation on the function of yeast oligosaccharyltransferase subunit Ost4. Glycobiology. doi:10.1093/glycob/cwab002. PMID: 33442744

Chaudhary, B. P. [Bharat Prasad]. (2021). Expression, purification, nmr structure, and molecular dynamics studies of Ost4 and Ost4V23D: A critical subunit of yeast oligosaccharyltransferase (Doctoral dissertation, Oklahoma State University). HDL: 11244/330899

Cook, J. C. (2021). Development of computer programs for fast computation of g-functions and automated ground heat exchanger design (Master’s thesis, Oklahoma State University). HDL: 11244/335489

Couger, M. B., Roy, S. W., Anderson, N., Gozashti, L., Pirro, S., Millward, L. S., Kim, M., Kilburn, D., Liu, K. J., Wilson, T. M., Epps, C. W., Dizney, L., Ruedas, L. A., & Campbell, P. (2021). Sex chromosome transformation and the origin of a male-specific x chromosome in the creeping vole. Science, 372(6542), 592–600. doi:10.1126/science.abg7019. PMID: 33958470

Al-Danoon, O. I. (2021). Overexpression, characterization, and structure-function studies of pheromone binding proteins from european corn borer, ostrinia nubilalis (Doctoral dissertation, Oklahoma State University). HDL: 11244/333771

Al-Danoon, O., Mazumder, S., Chaudhary, B. P., Nukala, V., Bishop, B., Cahoon, G., & Mohanty, S. (2021). Structural and functional characterization of european corn borer, ostrinia nubilalis, pheromone binding protein 3. Journal of Agricultural and Food Chemistry. doi:10.1021/acs.jafc.1c03775. PMID: 34758619

Day, J. I., Grotjahn, S., Senaweera, S., Koenig, B., & III, J. D. W. (2021). Defluorodearomatization: A photocatalytic birch-like reduction that enables C–C bond formation and provides access to unnatural cannabinoids. The Journal of Organic Chemistry. doi:10.1021/acs.joc.1c00169. PMID: 34076434

Dhakal, K., Kakani, V. G., Wagle, P., & Sharma, S. (2021). Empirical approach to estimate net ecosystem exchange using high frequency mesonet observations across potential switchgrass establishment landscapes in oklahoma. doi:10.1002/essoar.10508573.1

Espindola, A. S., Sempertegui-Bayas, D., Bravo-Padilla, D. F., reire-Zapata, V. F., Ochoa-Corona, F., & Cardwell, K. F. (2021). TASPERT: Target-specific reverse transcript pools to improve HTS plant virus diagnostic s. Viruses, 13(7), 1223. doi:10.3390/v13071223. PMID: 34202758

Feng, Y., Zhao, J., Spinolo, M., Lane, K., Leung, D., Marshall, D., & Mlinaric, P. (2021). Assessing the filtration effectiveness of a portable ultraviolet air cleaner on airborne SARS-CoV-2 laden droplets in a patient room: A numerical study. Aerosol and Air Quality Research, 21. doi:10.4209/aaqr.200608

Gaddam, M. G. (2021). Flow characterization inside airways with unsteady breathing patterns (Doctoral dissertation, Oklahoma State University). HDL: 11244/333753

Gaddam, M. G. & Santhanakrishnan, A. (2021). Effects of varying inhalation duration and respiratory rate on human airway flow. Fluids, 6(6), 221. doi:10.3390/fluids6060221

Galdadas, I., Qu, S., Oliveira, A. S. F., Olehnovics, E., Mack, A. R., Mojica, M. F., Agarwal, P. K., Tooke, C. L., Gervasio, F. L., Spencer, J., Bonomo, R. A., Mulholland, A. J., & Haider, S. (2021). Allosteric communication in class a β-lactamases occurs via cooperative coupling of loop dynamics. eLife, 10. doi:10.7554/elife.66567. PMID: 33755013

Han, T., Li, S., Su, S., Su, W., & Wu, Y. (2021). Heavy higgs bosons in 2HDM at a muon collider. Physical Review D, 104(5). doi:10.1103/physrevd.104.055029

Hayatifar, A. (2021). Exploration of Lewis acidity and fluorophilicity of germanium compounds and their applications in C-F bond activation (Doctoral dissertation, Oklahoma State University). HDL: 11244/330877

Hayatifar, A., Elifritz, E. A., Bloom, M. B., Pixley, K. M., Fennell, C. J., & Weinert, C. S. (2021). Direct amidation of acid fluorides using germanium amides. Dalton Transactions, 50(13), 4490–4493. doi:10.1039/d1dt00754h. PMID: 33877168

Hoitsma, N. M., Click, T. H., Agarwal, P. K., & Freudenthal, B. D. (2021). Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker. Computational and Structural Biotechnology Journal, 19, 3293–3302. doi:10.1016/j.csbj.2021.05.035

Ismail, A., Abraham, R. M., & Kling, F. (2021). Neutral current neutrino interactions at FASERν. Physical Review D, 103(5). doi:10.1103/physrevd.103.056014

Jayaraman, B. & Brasseur, J. G. (2021). Transition in atmospheric boundary layer turbulence structure from neutral to convective, and large-scale rolls. Journal of Fluid Mechanics, 913. doi:10.1017/jfm.2021.3

Kalgotra, P. & Sharda, R. (2021). When will i get out of the hospital? modeling length of stay using comorbidity networks. Journal of Management Information Systems, 38(4), 1150–1184. doi:10.1080/07421222.2021.1990618

Kelly, C. (2021). Project monarch: The application of ludwig prandtl’s bell-curve span loading to a straight, high performance sailplane wing (Master’s thesis, Oklahoma State University). HDL: 11244/333811

Kolewe, E. L., Feng, Y., & Fromen, C. A. (2021). Realizing lobe-specific aerosol targeting in a 3d-printed in vitro lung model. Journal of Aerosol Medicine and Pulmonary Drug Delivery, 34(1), 42–56. doi:10.1089/jamp.2019.1564. PMID: 32678723

Latifi, R., Palluccio, T. D., Ye, W., Minnick, J. L., Glinton, K. S., Rybak-Akimova, E. V., de Visser, S. P., & Tahsini, L. (2021). pH changes that induce an axial ligand effect on nonheme iron(IV) oxo complexes with an appended aminopropyl functionality. Inorganic Chemistry. doi:10.1021/acs.inorgchem.1c01312. PMID: 34291939

Li, W., Hou, W., Mishra, D., & Tutumluer, E. (2021). Modeling the dynamic behavior of track transitions along shared track corridors. Frontiers in Built Environment, 7. doi:10.3389/fbuil.2021.693744

Moen, D. S. (2021). Improving inference and avoiding over-interpretation of hidden-state diversification models: Specialized plant breeding has no effect on diversification in frogs. Evolution. doi:10.1111/evo.14406. PMID: 34854483

Moen, D. S., Ravelojaona, R. N., Hutter, C. R., & Wiens, J. J. (2021). Testing for adaptive radiation: A new approach applied to madagascar frogs. Evolution. doi:10.1111/evo.14328. PMID: 34396527

Narayanan, S., Ritchey, J. C., Patil, G., Narasaraju, T., More, S., Malayer, J., Saliki, J., Kaul, A., Agarwal, P. K., & Ramachandran, A. (2021). SARS-CoV-2 genomes from oklahoma, united states. Frontiers in Genetics, 11. doi:10.3389/fgene.2020.612571. PMID: 33613621

Niyibizi, B., Brorsen, B. W., & Park, E. (2021). Using bayesian kriging for spatial smoothing of trends in non-normal yield densities. ahead-of-print(ahead-of-print). doi:10.1108/afr-04-2021-0042

Oz, F., Evans, E., Goebel, T., Kara, K., Manimala, J., & Jewell, J. (2021). Interaction of ultrasonic acoustic waves and metasurface structures for hypersonic boundary-layer stability applications. Bulletin of the American Physical Society.

Oz, F. & Kara, K. (2021). Effects of local cooling on hypersonic boundary-layer stability. In AIAA scitech 2021 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2021-0940

Poudel, P., Bello, N. M., Marburger, D. A., Carver, B. F., Liang, Y., & Alderman, P. D. (2021). Ecophysiological modeling of yield and yield components in winter wheat using hierarchical bayesian analysis. Crop Science, 62(1), 358–373. doi:10.1002/csc2.20652

Premathilake, H. U. (2021). Elucidation of structural and functional characteristics of the gut microbiome of beef cattle under water stress (Doctoral dissertation, Oklahoma State University). HDL: 11244/333656

Redzic, J. S., Duff, M. R., Blue, A., Pitts, T. M., Agarwal, P., & Eisenmesser, E. Z. (2021). Modulating enzyme function via dynamic allostery within biliverdin reductase b. Frontiers in Molecular Biosciences, 8. doi:10.3389/fmolb.2021.691208. PMID: 34095235

Robinson, K., Yang, Q., Li, H., Zhang, L., Aylward, B., Arsenault, R. J., & Zhang, G. (2021). Butyrate and forskolin augment host defense, barrier function, and disease resistance without eliciting inflammation. Frontiers in Nutrition, 8. doi:10.3389/fnut.2021.778424. PMID: 34778349

Spitler, J., Cook, J., West, T., & Liu, X. (2021). G-function library for modeling vertical bore ground heat exchanger. doi:10.15121/1811518

Stoltz, K. R., Echeverria, E., Kaphle, A., Austin, A. J., Harikumar, P., Yost, A. J., McIlroy, D. N., & Borunda, M. F. (2021). Optimization of the U parameter in CoO groupings in ZnO (1010) and (1120) surfaces: A DFT+U and UPS study. Computational Materials Science, 198, 110700. doi:10.1016/j.commatsci.2021.110700

Tabassum, A., Vuppala, R. K., Bai, H., & Kara, K. (2021). Variance reduction of quadcopter trajectory tracking in turbulent wind. IFAC-PapersOnLine, 54(20), 102–107. doi:10.1016/j.ifacol.2021.11.160

Tasnim, T., Ryan, C., Christensen, M. L., Fennell, C. J., & Pitre, S. P. (2021). Radical perfluoroalkylation enabled by a catalytically generated halogen bonding complex and visible light irradiation. Organic Letters. doi:10.1021/acs.orglett.1c04139

Validi, H., Buchanan, A., & Lykhovyd, E. (2021). Imposing contiguity constraints in political districting models. Operations Research. doi:10.1287/opre.2021.2141

Vuppala, R. K. S. S. [Rohit K S S] & Kara, K. (2021). A novel approach in realistic wind data generation for the safe operation of small unmanned aerial systems in urban environment. In AIAA AVIATION 2021 FORUM. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2021-2505

Vuppala, R. K. S. S. [Rohit Kameshwara Sampath Sai] & Kara, K. (2021). Realistic wind data generation for small unmanned air systems in urban environment using convolutional autoencoders. In Aps division of fluid dynamics meeting abstracts (T29.005). APS Meeting Abstracts. Retrieved from https://ui.adsabs.harvard.edu/abs/2021APS..DFDT29005V

Wang, L. (2021). Experimental and modeling study on the effect of opening location in the under-ventilated compartment fire (Master’s thesis, Oklahoma State University). HDL: 11244/330952

Wang, R., Miao, Z., Liu, T., Liu, M., Grdinovac, K., Song, X., Liang, Y., Delen, D., & Paiva, W. (2021). Derivation and validation of essential predictors and risk index for early detection of diabetic retinopathy using electronic health records. Journal of Clinical Medicine, 10(7), 1473. doi:10.3390/jcm10071473. PMID: 33918304

Weber, R. N. (2021). Molecular dynamics simulations of peptide and protein systems (Doctoral dissertation, Colorado State University). HDL: 10217/233854

Weber, R. & McCullagh, M. (2021). Role of ATP in the RNA translocation mechanism of SARS-CoV-2 NSP13 helicase. 125(31), 8787–8796. doi:10.1021/acs.jpcb.1c04528. PMID: 34328740

Weekley, S. (2021). Design and analysis of bellwether: A flying wing featuring the bell-shaped spanload (Master’s thesis, Oklahoma State University). HDL: 11244/330953

Weekley, S. M., Paul, R. C., & Jacob, J. D. (2021). Design and testing of bellwether: A flying wing featuring the bell span-load. In AIAA AVIATION 2021 FORUM. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2021-2438

Yang, Q., Liu, J., Wang, X., Robinson, K., Whitmore, M. A., Stewart, S. N., Zhao, J., & Zhang, G. (2021). Identification of an intestinal microbiota signature associated with the severity of necrotic enteritis. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.703693. PMID: 34489892

Yi, H., Wang, Q., & Feng, Y. (2021). Computational analysis of obstructive disease and cough intensity effects on the mucus transport and clearance in an idealized upper airway model using the volume of fluid method. Physics of Fluids, 33(2), 021903. doi:10.1063/5.0037764

Zhao, J. (2021). Unveiling advanced mechanisms of inhalable drug aerosol dynamics using computational fluid dynamics and discrete element method (Doctoral dissertation, Oklahoma State University). HDL: 11244/333784

Zhao, J., Feng, Y., Koshiyama, K., & Wu, H. (2021). Prediction of airway deformation effect on pulmonary air-particle dynamics: A numerical study. 33(10), 101906. doi:10.1063/5.0065309

2020

Abele, E., Ray, K., Jacob, J., & Gaeta, R. (2020). Collection device for dolphin hormones in blowhole jet flow field. Bulletin of the American Physical Society.

Agarwal, P. K., Bernard, D. N., Bafna, K., & Doucet, N. (2020). Enzyme dynamics: Looking beyond a single structure. ChemCatChem, 12(19), 4704–4720. doi:10.1002/cctc.202000665. PMID: 33897908

Alderman, P. D. (2020). A comprehensive R interface for the DSSAT cropping systems model. Computers and Electronics in Agriculture, 172, 105325. doi:10.1016/j.compag.2020.105325

Alexander, A. S. & Santhanakrishnan, A. (2020). Mechanisms of power augmentation in two side-by-side vertical axis wind turbines. Renewable Energy, 148, 600–610. doi:10.1016/j.renene.2019.10.149

Banerjee, A. (2020). Investigation into biodegradability of ionic liquids employing active site models (Doctoral dissertation, Oklahoma State University). HDL: 11244/328628

Banerjee, A. & Shah, J. K. (2020). Elucidating the effect of the ionic liquid type and alkyl chain length on the stability of ionic liquid–iron porphyrin complexes. The Journal of Chemical Physics, 153(3), 034306. doi:10.1063/5.0007815. PMID: 32716177

Clark, J. M. (2020). Polynomials with small elliptic mahler measure via genetic algorithms (Master’s thesis, Oklahoma State University). HDL: 11244/325521

Couger, M. B., Graham, C., & Fathepure, B. Z. (2020). Genome sequence of lignin-degrading arthrobacter sp. strain RT-1, isolated from termite gut and rumen fluid. Microbiology Resource Announcements, 9(3). doi:10.1128/mra.01442-19

Day, J. I. (2020). Fluorination and photocatalysis: New horizons (Doctoral dissertation, Oklahoma State University). HDL: 11244/337482

Dhakal, K., Kakani, V. G., Ochsner, T. E., & Sharma, S. (2020). Constructing retrospective gridded daily weather data for agro-hydrological applications in oklahoma. Agrosystems, Geosciences & Environment, 3(1). doi:10.1002/agg2.20072

DiPasquale, M., Francisco, C. A., Mermin, J., & Schweig, J. (2020). Free and non-free multiplicities on the A₃ arrangement. Journal of Algebra, 544, 498–532. doi:10.1016/j.jalgebra.2019.10.029

Farmanesh, B., Pourhabib, A., Balasundaram, B., & Buchanan, A. (2020). A bayesian framework for functional calibration of expensive computational models through non-isometric matching. IISE Transactions, 53(3), 352–364. doi:10.1080/24725854.2020.1774688

Fisher, S. J., Alexander, A. S., & Elbing, B. R. (2020). Computational model of flow surrounding brazilian free-tailed bat ear tubercles. In AIAA scitech 2020 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2020-2021

Fisher, S. J. F. (2020). Computational and experimental investigation of brazilian free-tailed bat ear tubercles on an airfoil leading edge (Master’s thesis, Oklahoma State University). HDL: 11244/325524

Freire Zapata, V. E. (2020). Effects of subinhibitory doses of the fungicide iprodione on the plant pathogens fusarium oxysporum and f. proliferatum (Master’s thesis, Oklahoma State University). HDL: 11244/335491

Hoitsma, N. M., Whitaker, A. M., Beckwitt, E. C., Jang, S., Agarwal, P., Van Houten, B., & Freudenthal, B. D. (2020). AP-endonuclease 1 sculpts DNA through an anchoring tyrosine residue on the DNA intercalating loop. Nucleic Acids Research. doi:10.1093/nar/gkaa496. PMID: 32542366

Huang, C., Liang, Y., Zeng, X., Yang, X., Xu, D., Gou, X., Sathiaseelan, R., Senavirathna, L. K., Wang, P., & Liu, L. (2020). Long noncoding RNA FENDRR exhibits antifibrotic activity in pulmonary fibrosis. American Journal of Respiratory Cell and Molecular Biology, 62(4), 440–453. doi:10.1165/rcmb.2018-0293oc. PMID: 31697569

Jayaraman, B. & Mamun, S. M. A. A. [S M Abdullah Al]. (2020). On data-driven sparse sensing and linear estimation of fluid flows. Sensors, 20(13), 3752. doi:10.3390/s20133752

Juenger, J. A. (2020). Reciprocal characteristics of surface waves: Detecting near surface anomalies (Master’s thesis, Oklahoma State University). HDL: 11244/328653

Kapoor, U. & Shah, J. K. (2020). Macroscopic differentiators for microscopic structural nonideality in binary ionic liquid mixtures. The Journal of Physical Chemistry B, 124(36), 7849–7856. doi:10.1021/acs.jpcb.0c03740. PMID: 32790368

Kolewe, E. L., Feng, Y., & Fromen, C. A. (2020). Realizing lobe-specific aerosol targeting in a 3d-printed in vitro lung model. Journal of Aerosol Medicine and Pulmonary Drug Delivery. doi:10.1089/jamp.2019.1564

Kumar, P., Agarwal, P. K., & Cuneo, M. J. (2020). On the case of the misplaced hydrogens. ChemBioChem. doi:10.1002/cbic.202000376. PMID: 32706524

Latifi, R., Minnick, J. L., Quesne, M. G., de Visser, S. P., & Tahsini, L. (2020). Computational studies of DNA base repair mechanisms by nonheme iron dioxygenases: Selective epoxidation and hydroxylation pathways. Dalton Transactions, 49(14), 4266–4276. doi:10.1039/d0dt00007h. PMID: 32141456

Li, X., Deng, S., Raun, W. R., Wang, Y., & Teng, Y. (2020). Bacterial community in soils following century-long application of organic or inorganic fer tilizers under continuous winter wheat cultivation. Agronomy, 10(10), 1497. doi:10.3390/agronomy10101497

Mamun, S. M. A. A. [S. M. Abdullah Al]. (2020). Data-driven sparse estimation of nonlinear fluid flows (Master’s thesis, Oklahoma State University). HDL: 11244/325505

Maulik, R. & San, O. (2020). Numerical assessments of a parametric implicit large eddy simulation model. Journal of Computational and Applied Mathematics, 376, 112866. doi:10.1016/j.cam.2020.112866

Mi, H., Wang, W., Liu, Y., & Wang, T. (2020). Theoretical evaluation of corrosion inhibition performance of six thiadiazole derivatives. Journal of Theoretical and Computational Chemistry, 19(02), 2050010. doi:10.1142/s0219633620500108

Miao, Z. & Balasundaram, B. (2020). An ellipsoidal bounding scheme for the quasi-clique number of a graph. INFORMS Journal on Computing, 32(3), 763–778. doi:10.1287/ijoc.2019.0922

Mosquera-Yuqui, F., Lopez-Guerra, N., & Moncayo-Palacio, E. A. (2020). Targeting the 3clpro and RdRp of SARS-CoV-2 with phytochemicals from medicinal plants of the andean region: Molecular docking and molecular dynamics simulations. Journal of Biomolecular Structure and Dynamics, 1–14. doi:10.1080/07391102.2020.1835716. PMID: 33084512

Narayanan, C., Bernard, D. N., Létourneau, M., Gagnon, J., Gagné, D., Bafna, K., Calmettes, C., Couture, J.-F., Agarwal, P. K., & Doucet, N. (2020). Insights into structural and dynamical changes experienced by human RNase 6 upon ligand binding. Biochemistry, 59(6), 755–765. doi:10.1021/acs.biochem.9b00888. PMID: 31909602

Oz, F. & Kara, K. (2020). Effects of local wall cooling on hypersonic boundary-layer stability on a blunt cone. Bulletin of the American Physical Society.

Payne, D. (2020). Detection of single nucleotide mutations unique to the wisconsin outbreak strains of elizabethkinia anophelis (Master’s thesis, Oklahoma State University). HDL: 11244/335492

Proaño Cuenca, M. F. (2020). Genomic resources for phylogenetics, population genetics and detection of oomycete plant pathogens (Doctoral dissertation, Oklahoma State University). HDL: 11244/337472

Puligilla, S. C. & Jayaraman, B. (2020). Assessment of end-to-end and sequential data-driven learning for non-intrusive modeling of fluid flows. Advances in Computational Mathematics, 46(4). doi:10.1007/s10444-020-09753-7

Rohrer, M. A. (2020). Re-evaluation of the SCO2 and SC seismic reflection datasets, eastern south carolina: Implications for tectonic evolution and seismicity (Master’s thesis, Oklahoma State University). HDL: 11244/325538

Spitler, J., Cook, J., & Liu, X. (2020). Recent experiences calculating g-functions for use in simulation of ground heat exchangers. Geothermal Resources Council Transactions, 44 Clean, Renewable and Always On, 296–315. HDL: 11244/335285. Retrieved from https://publications.mygeoenergynow.org/grc/1034222.pdf

Spitler, J. D., Cook, J. C., & Liu, X. (2020). A preliminary investigation on the cost reduction potential of optimizing bore fields for commercial ground source heat pump systems. In Proceedings, 45th workshop on geothermal reservoir engineering. SGP-TR-216. Stanford, California: Stanford University. Retrieved from http://pangea.stanford.edu/ERE/pdf/IGAstandard/SGW/2020/Spitler.pdf

Straub, S. C. K., Boutte, J., Fishbein, M., & Livshultz, T. (2020). Enabling evolutionary studies at multiple scales in apocynaceae through hyb-seq. Applications in Plant Sciences, 8(11). doi:10.1002/aps3.11400. PMID: 33304663

Strong, M. D., Hart, M. D., Tang, T. Z., Ojo, B. A., Wu, L., Nacke, M. R., Agidew, W. T., Hwang, H. J., Hoyt, P. R., Bettaieb, A., Clarke, S. L., Smith, B. J., Stoecker, B. J., Lucas, E. A., Lin, D., & Chowanadisai, W. (2020). Role of zinc transporter ZIP12 in susceptibility-weighted brain magnetic resonance imaging (MRI) phenotypes and mitochondrial function. The FASEB Journal. doi:10.1096/fj.202000772r

Tian, R., Ning, D., He, Z., Zhang, P., Spencer, S. J., Gao, S., Shi, W., Wu, L., Zhang, Y., Yang, Y., Adams, B. G., Rocha, A. M., Detienne, B. L., Lowe, K. A., Joyner, D. C., Klingeman, D. M., Arkin, A. P., Fields, M. W., Hazen, T. C., Stahl, D. A., Alm, E. J., & Zhou, J. (2020). Small and mighty: Adaptation of superphylum patescibacteria to groundwater environment drives their genome simplicity. Microbiome, 8(1). doi:10.1186/s40168-020-00825-w

Valdivia, A. O., Agarwal, P. K., & Bhattacharya, S. K. (2020). Myelin basic protein phospholipid complexation likely competes with deimination in experimental autoimmune encephalomyelitis mouse model. ACS Omega, 5(25), 15454–15467. doi:10.1021/acsomega.0c01590. PMID: 32637820

Vuppala, R. K. S. S. & Kara, K. (2020). Large-eddy simulation of atmospheric boundary-layer gusts for small unmanned air systems. In Aps division of fluid dynamics meeting abstracts (H12.007). APS Meeting Abstracts. Retrieved from https://ui.adsabs.harvard.edu/abs/2020APS..DFDH12007V

Watson, L. E., Siniscalchi, C. M., & Mandel, J. (2020). Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, astereae, calenduleae, gnaphalieae, and senecioneae. Journal of Systematics and Evolution, 58(6), 841–852. doi:10.1111/jse.12698

Weaver, T. M., Cortez, L. M., Khoang, T. H., Washington, M. T., Agarwal, P. K., & Freudenthal, B. D. (2020). Visualizing rev1 catalyze protein-template DNA synthesis. Proceedings of the National Academy of Sciences, 117(41), 25494–25504. doi:10.1073/pnas.2010484117. PMID: 32999062

Yadav, A., Vilcáez, J., Farag, I. F., Johnson, B., Mueller, K., Youssef, N. H., & Elshahed, M. S. (2020). Candidatus mcinerneyibacterium aminivorans gen. nov., sp. nov., the first representative of the candidate phylum mcinerneyibacteriota phyl. nov. recovered from a high temperature, high salinity tertiary oil reservoir in north central oklahoma, USA. Systematic and Applied Microbiology, 43(2), 126057. doi:10.1016/j.syapm.2020.126057. PMID: 31987701

Yi, H. (2020). Characterization of large LPG pool fires and mucus clearance dynamics in upper airway using CFD method (Doctoral dissertation, Oklahoma State University). HDL: 11244/329998

Yi, H., Feng, Y., Park, H., & Wang, Q. (2020). Configuration predictions of large liquefied petroleum gas (LPG) pool fires using CFD method. Journal of Loss Prevention in the Process Industries, 65, 104099. doi:10.1016/j.jlp.2020.104099

2019

Ahmed, S. E., Rahman, S. M., San, O., Rasheed, A., & Navon, I. M. (2019). Memory embedded non-intrusive reduced order modeling of non-ergodic flows. Physics of Fluids, 31(12), 126602. doi:10.1063/1.5128374

Akumaga, U. & Alderman, P. D. (2019). Comparison of penman–monteith and priestley-taylor evapotranspiration methods for crop modeling in oklahoma. Agronomy Journal, 111(3), 1171. doi:10.2134/agronj2018.10.0694

Avery, A. S. [Alyssa S.], Bunting, L., & Jacob, J. D. (2019). Low altitude icing for small unmanned aircraft. In AIAA aviation 2019 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2019-3305

Avery, A. S. [Alyssa Shearon]. (2019). Ice accretion on small unmanned aircraft (Doctoral dissertation, Oklahoma State University). HDL: 11244/323357

Ayala Ortiz, C. O. (2019). Comparative genomics of six species of deltocephaline leafhoppers to discover vector competence-related genes (Master’s thesis, Oklahoma State University). HDL: 11244/324818

Ayalew, S., Confer, A. W., & Couger, M. B. (2019). Genome sequence of a bovine isolate of pasteurella multocida strain 232. Microbiology Resource Announcements, 8(20). doi:10.1128/mra.00333-19. PMID: 31097504

Banerjee, A. & Shah, J. K. (2019). Insight into conformationally-dependent binding of 1-n-alkyl-3-methylimidazolium cations to porphyrin molecules using quantum mechanical calculations. Physical Chemistry Chemical Physics, 21(19), 10095–10104. doi:10.1039/c9cp01538h

Basney, J., Welch, V., Brunson, D., Shankar, A., Avila, K., Krenz, M., Del Vento, D., Chourasia, A., Wong, M., Marru, S., et al. (2019). Trusted CI: PEARC19 workshop. HDL: 2142/104693

Berente, N., Ahalt, S., Bottum, J., Brunson, D., Cutcher-Gershenfeld, J., Howison, J., King, J. L., Neeman, H., Towns, J., Wilkins-Diehr, N., & Winter, S. (2019). The professionalization of cyberinfrastructure personnel? In Proceedings of the practice and experience in advanced research computing on rise of the machines (learning) (87:1–87:6). PEARC ’19. Chicago, IL, USA: ACM. doi:10.1145/3332186.3332225

Blagden, T., Espindola, A., Cardwell, K., Ortega-Beltran, A., & Bandyopadhyay, R. (2019). Draft genome sequences of three isolates of coniothyrium glycines, causal agent of red leaf blotch of soybean. Microbiology Resource Announcements, 8(40). doi:10.1128/mra.00378-19. PMID: 31582431

Boutte, J., Fishbein, M., Liston, A., & Straub, S. C. (2019). NGS-indel coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (asclepias). Molecular Phylogenetics and Evolution, 139, 106534. doi:10.1016/j.ympev.2019.106534. PMID: 31212081

Brazil, M., Brunson, D., Culich, A., DeStefano, L., Jennewein, D., Jolley, T., Middelkoop, T., Neeman, H., Rivera, L., Smith, J., & Wernert, J. (2019). Campus champions: Building and sustaining a thriving community of practice around research computing and data. In Proceedings of the practice and experience in advanced research computing on rise of the machines (learning) (78:1–78:7). PEARC ’19. Chicago, IL, USA: ACM. doi:10.1145/3332186.3332200

Cosby, T., Kapoor, U., Shah, J. K., & Sangoro, J. (2019). Mesoscale organization and dynamics in binary ionic liquid mixtures. The Journal of Physical Chemistry Letters, 10(20), 6274–6280. doi:10.1021/acs.jpclett.9b02478

Dai, H. K. (2019). Finding all minimal maximum subsequences in parallel. In Future data and security engineering (pp. 165–184). Springer International Publishing. doi:10.1007/978-3-030-35653-8˙12

Farmanesh, B. & Pourhabib, A. (2019). Sparse pseudo-input local kriging for large spatial datasets with exogenous variables. IISE Transactions, 1–15. doi:10.1080/24725854.2019.1624926

Feng, X., Liang, Y., Gallardo, B., & Papeş, M. (2019). Physiology in ecological niche modeling: Using zebra mussel’s upper thermal tolerance to refine model predictions through bayesian analysis. Ecography. doi:10.1111/ecog.04627

Feng, X., Park, D. S., Liang, Y., Pandey, R., & Papeş, M. (2019). Collinearity in ecological niche modeling: Confusions and challenges. Ecology and Evolution, 9(18), 10365–10376. doi:10.1002/ece3.5555. PMID: 31624555

Fernandes Junior, F. E. & Yen, G. G. (2019). Particle swarm optimization of deep neural networks architectures for image classification. Swarm and Evolutionary Computation, 49, 62–74. doi:10.1016/j.swevo.2019.05.010

Frazier, A. E., Hemingway, B. L., & Brasher, J. P. (2019). Land surface heterogeneity and tornado occurrence: An analysis of tornado alley and dixie alley. Geomatics, Natural Hazards and Risk, 10(1), 1475–1492. doi:10.1080/19475705.2019.1583292

Fu, X. (2019). Effects of bacterial roles on the formation of disinfection by-products under metal induction and biofilm response to antibiotics (Doctoral dissertation, Oklahoma State University). HDL: 11244/321523

Gharibdousti, S. R., Kharel, G., Miller, R. B., Linde, E., & Stoecker, A. (2019). Projected climate could increase water yield and cotton yield but decrease winter wheat and sorghum yield in an agricultural watershed in oklahoma. Water, 11(1), 105. doi:10.3390/w11010105

Glinton, K., Latifi, R., Cockrell, D. S., Bardeaux, M., Nguyen, B., & Tahsini, L. (2019). Synthesis, characterization, and photoluminescent studies of three-coordinate cu(i)–NHC complexes bearing unsymmetrically-substituted dipyridylamine ligands. RSC Advances, 9(39), 22417–22427. doi:10.1039/c9ra04886c. PMID: 35519490

Goud, E. M., Sparks, J. P., Fishbein, M., & Agrawal, A. A. (2019). Integrated metabolic strategy: A framework for predicting the evolution of carbon-water tradeoffs within plant clades. Journal of Ecology, 107(4), 1633–1644. doi:10.1111/1365-2745.13204

Haghnegahdar, A., Zhao, J., Kozak, M., Williamson, P., & Feng, Y. (2019). Development of a hybrid CFD-PBPK model to predict the transport of xenon gas around a human respiratory system to systemic regions. Heliyon, 5(4), e01461. doi:10.1016/j.heliyon.2019.e01461. PMID: 31011641

Hayatifar, A., Borrego, A., Bosek, D., Czarnecki, M., Derocher, G., Kuplicki, A., Lytle, E., Padilla, J., Paroly, C., Tubay, G., Vyletel, J., & Weinert, C. S. (2019). Transition metal-free hydrodefluorination of acid fluorides and organofluorines by Ph₃GeH promoted by catalytic [Ph₃C][B(C₆F₅)₄]. Chemical Communications, 55(73), 10852–10855. doi:10.1039/c9cc05075b

Huang, C., Liang, Y., Zeng, X., Yang, X., Xu, D., Gou, X., Sathiaseelan, R., Senavirathna, L. K., Wang, P., & Liu, L. (2019). lncRNA FENDRR exhibits anti-fibrotic activity in pulmonary fibrosis. American Journal of Respiratory Cell and Molecular Biology. doi:10.1165/rcmb.2018-0293oc

Jaiswal, P., Alam, M. I., & Sharma, S. (2019). System and method for recording high-fidelity seismic waveforms. WO/2019/079600. Oklahoma State University. Retrieved from https://patents.google.com/patent/WO2019079600A1/

Jayaraman, B., Allison, S., & Bai, H. (2019). Estimation of atmospheric boundary layer turbulence structure using modelled small UAS dynamics within LES. In AIAA scitech 2019 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2019-1600

Jayaraman, B., Lu, C., Whitman, J., & Chowdhary, G. (2019). Sparse feature map-based markov models for nonlinear fluid flows. Computers & Fluids, 191, 104252. doi:10.1016/j.compfluid.2019.104252

Jayaraman, B., Mamun, S. M. A. A., & Lu, C. (2019). Interplay of sensor quantity, placement and system dimension in POD-based sparse reconstruction of fluid flows. Fluids, 4(2), 109. doi:10.3390/fluids4020109

Jones, K. E., Fér, T., Schmickl, R. E., Dikow, R. B., Funk, V. A., Herrando-Moraira, S., Johnston, P. R., Kilian, N., Siniscalchi, C. M., Susanna, A., Slovák, M., Thapa, R., Watson, L. E., & Mandel, J. R. (2019). An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in asteraceae. Applications in Plant Sciences, 7(10). doi:10.1002/aps3.11295

Judkins, M. E., Couger, B. M., Warren, W. C., & Van Den Bussche, R. A. (2019). A 50k SNP array reveals genetic structure for bald eagles (haliaeetus leucocephalus). Conservation Genetics. doi:10.1007/s10592-019-01216-x

Kapoor, U., Banerjee, A., & Shah, J. K. (2019). Evaluation of the predictive capability of ionic liquid force fields for CH₄, CO₂, NH₃, and SO₂ phase equilibria. Fluid Phase Equilibria, 492, 161–173. doi:10.1016/j.fluid.2019.03.013

Kapoor, U. & Shah, J. K. (2019). Monte carlo simulations of pure and mixed gas solubilities of CO₂ and CH₄ in nonideal ionic liquid–ionic liquid mixtures. Industrial & Engineering Chemistry Research, 58(50), 22569–22578. doi:10.1021/acs.iecr.9b03384

Khan, S. (2019). Near wall structure and deviation from equilibrium in wavy channel turbulence (Master’s thesis, Oklahoma State University). HDL: 11244/323408

Khan, S. & Jayaraman, B. (2019). Statistical structure and deviations from equilibrium in wavy channel turbulence. Fluids, 4(3), 161. doi:10.3390/fluids4030161

Lim, A., Naidenov, B., Bates, H., Willyerd, K., Snider, T., Couger, M. B., Chen, C., & Ramachandran, A. (2019). Nanopore ultra-long read sequencing technology for antimicrobial resistance detection in mannheimia haemolytica. Journal of Microbiological Methods, 159, 138–147. doi:10.1016/j.mimet.2019.03.001. PMID: 30849421

Lu, Y. (2019). Finding second-order clubs (Doctoral dissertation, Oklahoma State University). HDL: 11244/323360

Mandel, J. R., Dikow, R. B., Siniscalchi, C. M., Thapa, R., Watson, L. E., & Funk, V. A. (2019). A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of asteraceae. Proceedings of the National Academy of Sciences, 116(28), 14083–14088. doi:10.1073/pnas.1903871116

Mashayekhi, M. (2019). Studies of heat shock protein A9 (HSPA9/Mortalin/Grp75) substrate binding domain and anticancer flex-hets interactions using nuclear magnetic resonance and molecular mechanics tools (Doctoral dissertation, Oklahoma State University). HDL: 11244/321552

Maulik, R., San, O., Jacob, J. D., & Crick, C. (2019). Sub-grid scale model classification and blending through deep learning. Journal of Fluid Mechanics, 870, 784–812. doi:10.1017/jfm.2019.254

Mitchell, M. S. (2019). An enhanced vertical ground heat exchanger model for whole-building energy simulation (Doctoral dissertation, Oklahoma State University). HDL: 11244/323367

Mitchell, M. S. & Spitler, J. D. (2019). Characterization, testing, and optimization of load aggregation methods for ground heat exchanger response-factor models. Science and Technology for the Built Environment, 25(8), 1036–1051. doi:10.1080/23744731.2019.1648936

Moen, D. S. (2019). What determines the distinct morphology of species with a particular ecology? the roles of many-to-one mapping and trade-offs in the evolution of frog ecomorphology and performance. The American Naturalist, 194(4), E81–E95. doi:10.1086/704736. PMID: 31490721

More, S., Zhu, Z., Lin, K., Huang, C., Pushparaj, S., Liang, Y., Sathiaseelan, R., Yang, X., & Liu, L. (2019). Long non-coding RNA PSMB8-AS1 regulates influenza virus replication. RNA Biology, 16(3), 340–353. doi:10.1080/15476286.2019.1572448

Murphy, C. L., Youssef, N. H., Hanafy, R. A., Couger, M. B., Stajich, J. E., Wang, Y., Baker, K., Dagar, S. S., Griffith, G. W., Farag, I. F., Callaghan, T. M., & Elshahed, M. S. (2019). Horizontal gene transfer as an indispensable driver for evolution of neocallimastigomycota into a distinct gut-dwelling fungal lineage. Applied and Environmental Microbiology, 85(15). doi:10.1128/aem.00988-19. PMID: 31126947

Mylkes, D. L., Chang, E. S., Chang, S. A., Durica, D. S., Tomanek, L., Ventura, T., & Zhou, W. (2019). Signaling pathways controlling phase transitions in the crustacean molting gland. In The crustacean society mid-year meeting 2019: Abstract booklet (p. 88). HDL: 2117/187481

Naidenov, B., Lim, A., Willyerd, K., Torres, N. J., Johnson, W. L., Hwang, H. J., Hoyt, P., Gustafson, J. E., & Chen, C. (2019). Pan-genomic and polymorphic driven prediction of antibiotic resistance in elizabethkingia. Frontiers in Microbiology, 10. doi:10.3389/fmicb.2019.01446. PMID: 31333599

Narayanan, S., Bates, H., Confer, A., Couger, B., & Ramachandran, A. (2019). Whole-genome sequence of multidrug-resistant bibersteinia trehalosi strain OADDL-BT1. Microbiology Resource Announcements, 8(6). doi:10.1128/mra.01690-18

Neeman, H., Al-Azzawi, H. M., Brunson, D., Burke, W., Colbry, D., Falgout, J. T., Ferguson, J. W., Gesing, S., Gyllinsky, J., Simmons, C. S., Simms, J. L., Tanash, M., Voss, D., Wells, J., & Yockel, S. (2019). Cultivating the cyberinfrastructure workforce via an intermediate/advanced virtual residency workshop. In Proceedings of the practice and experience in advanced research computing on rise of the machines (learning) (79:1–79:8). PEARC ’19. Chicago, IL, USA: ACM. doi:10.1145/3332186.3332204

Niyibizi, B. (2019). Spatial smoothing of corn yield trends and robustness of the impact of climate change on us corn yields (Doctoral dissertation, Oklahoma State University). HDL: 11244/323371

Ochsner, T. E., Linde, E., Haffner, M., & Dong, J. (2019). Mesoscale soil moisture patterns revealed using a sparse in situ network and regression kriging. Water Resources Research, 55(6), 4785–4800. doi:10.1029/2018wr024535

Pawar, S., Rahman, S. M., Vaddireddy, H., San, O., Rasheed, A., & Vedula, P. (2019). A deep learning enabler for nonintrusive reduced order modeling of fluid flows. Physics of Fluids, 31(8), 085101. doi:10.1063/1.5113494

Pourhabib, A. (2019). Empirical similarity for absent data generation in imbalanced classification. In Lecture notes in networks and systems (pp. 1010–1030). Springer International Publishing. doi:10.1007/978-3-030-12388-8˙70

Rahman, S. M. [Sk. M.], Ahmed, S. E., & San, O. (2019). A dynamic closure modeling framework for model order reduction of geophysical flows. Physics of Fluids, 31(4), 046602. doi:10.1063/1.5093355

Rahman, S. M. [Sk. Mashfiqur] & San, O. (2019). A relaxation filtering approach for two-dimensional rayleigh–taylor instability-induced flows. Fluids, 4(2), 78. doi:10.3390/fluids4020078

Rosenfeld, J. A., Russo, B., Kamalapurkar, R., & Johnson, T. T. (2019). The occupation kernel method for nonlinear system identification. doi:10.48550/ARXIV.1909.11792

Sharp, G. M. (2019). Evaluation and optimization of bioinformatic tools for the detection of human foodborne pathogens in complex metagenomic datasets (Doctoral dissertation, Oklahoma State University). HDL: 11244/323446

Shukla, K. (2019). Seismic wave propagation, attenuation and scattering in porous media across various scales (Doctoral dissertation, Oklahoma State University). HDL: 11244/324877

Sun, S., Miao, Z., Ratcliffe, B., Campbell, P., Pasch, B., El-Kassaby, Y. A., Balasundaram, B., & Chen, C. (2019). SNP variable selection by generalized graph domination. PLOS ONE, 14(1), e0203242. doi:10.1371/journal.pone.0203242. PMID: 30677030

Sun, T. (2019). Models and methods of quantitative single-fiber reflectance spectroscopy of tissue properties (Doctoral dissertation, Oklahoma State University). HDL: 11244/324880

Sun, T. & Piao, D. (2019a). An integration model of steady-state single-fiber diffuse reflectance. In S. Fantini, P. Taroni, B. J. Tromberg, & E. M. Sevick-Muraca (Eds.), Optical tomography and spectroscopy of tissue XIII. SPIE. doi:10.1117/12.2509942

Sun, T. & Piao, D. (2019b). Simple analytical total diffuse reflectance over a reduced-scattering-pathlength scaled dimension of [10^-5, 10^-1] from a medium with HG scattering anisotropy. Applied Optics, 58(33), 9279. doi:10.1364/ao.58.009279

Wang, Y., Youssef, N. H., Couger, M. B., Hanafy, R. A., Elshahed, M. S., & Stajich, J. E. (2019). Molecular dating of the emergence of anaerobic rumen fungi and the impact of laterally acquired genes. mSystems, 4(4). doi:10.1128/msystems.00247-19. PMID: 31455637

Weitemier, K., Straub, S. C., Fishbein, M., Bailey, C. D., Cronn, R. C., & Liston, A. (2019). A draft genome and transcriptome of common milkweed (asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and apocynaceae. PeerJ, 7, e7649. doi:10.7717/peerj.7649

Willson, D., Monleon, V., & Weiskittel, A. (2019). Quantification and incorporation of uncertainty in forest growth and yield projections using a bayesian probabilistic framework: A demonstration for plantation coastal douglas-fir in the pacific northwest, usa. Mathematical and Computational Forestry & Natural-Resource Sciences (MCFNS), 11(2), 264–285(22). Retrieved from http://mcfns.net/index.php/Journal/article/view/11.3

Wilson, T. (2019). Investigation of low-profile vortex generators via computational methods (Master’s thesis, Oklahoma State University). HDL: 11244/323435

Wilson, T. C., KC, R., Lucido, N. A., Elbing, B. R., Alexander, A. S., Jacob, J. D., Ireland, P., & Black, J. A. (2019). Computational investigation of the conformal vortex generator. In AIAA scitech 2019 forum. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2019-2138

Xiao, B. (2019). Boussinesq equations with partial or fractional dissipation (Doctoral dissertation, Oklahoma State University). HDL: 11244/321588

Yi, H., Feng, Y., & Wang, Q. (2019). Computational fluid dynamics (CFD) study of heat radiation from large liquefied petroleum gas (LPG) pool fires. Journal of Loss Prevention in the Process Industries, 61, 262–274. doi:10.1016/j.jlp.2019.06.015

Youssef, N. H., Farag, I. F., Hahn, C. R., Jarett, J., Becraft, E., Eloe-Fadrosh, E., Lightfoot, J., Bourgeois, A., Cole, T., Ferrante, S., Truelock, M., Marsh, W., Jamaleddine, M., Ricketts, S., Simpson, R., McFadden, A., Hoff, W., Ravin, N. V., Sievert, S., Stepanauskas, R., Woyke, T., & Elshahed, M. (2019). Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities. Applied and Environmental Microbiology, 85(10). doi:10.1128/aem.00110-19

Youssef, N. H., Farag, I. F., Hahn, C. R., Premathilake, H., Fry, E., Hart, M., Huffaker, K., Bird, E., Hambright, J., Hoff, W. D., & Elshahed, M. S. (2019). Candidatus krumholzibacterium zodletonense gen. nov., sp nov, the first representative of the candidate phylum krumholzibacteriota phyl. nov. recovered from an anoxic sulfidic spring using genome resolved metagenomics. Systematic and Applied Microbiology, 42(1), 85–93. doi:10.1016/j.syapm.2018.11.002

Youssef, N. H., Farag, I. F., Rudy, S., Mulliner, A., Walker, K., Caldwell, F., Miller, M., Hoff, W., & Elshahed, M. (2019). The wood–ljungdahl pathway as a key component of metabolic versatility in candidate phylum bipolaricaulota (acetothermia, OP1). Environmental Microbiology Reports. doi:10.1111/1758-2229.12753

2018

Ahmed, M. & San, O. [Omer]. (2018). Stabilized principal interval decomposition method for model reduction of nonlinear convective systems with moving shocks. Computational and Applied Mathematics, 37(5), 6870–6902. doi:10.1007/s40314-018-0718-z

Alexander, A. (2018). Fluid dynamic mechanisms of power augmentation in vertical axis wind turbines (Doctoral dissertation, Oklahoma State University). HDL: 11244/317601

Allison, S., Bai, H., & Jayaraman, B. (2018). Modeling trajectory performance of quadrotors under wind disturbances. In 2018 AIAA information systems-AIAA infotech @ aerospace. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2018-1237

Alotaibi, F. S. (2018). Changes in gene expression under water stress in the flag leaf and seed head during the grain-filling stage of two spring wheat cultivars (Doctoral dissertation, Oklahoma State University). HDL: 11244/319632

Alotaibi, M. A. (2018). Molecular and physiological indicators of drought stress in soft white spring wheat at the vegetative stage development (Doctoral dissertation, Oklahoma State University). HDL: 11244/317734

Anderson, M. (2018). A lab-made method for extracting DNA from soils. Soil Research, 56(6), 560. doi:10.1071/sr17261

Aneke, M. C. (2018). Seismic characterization of a glaciated multi-layered aquifer system in central illinois (Master’s thesis, Oklahoma State University). HDL: 11244/319624

Appelhans, M. S., Wen, J., Duretto, M., Crayn, D., & Wagner, W. L. (2018). Historical biogeography ofMelicope(rutaceae) and its close relatives with a special emphasis on pacific dispersals. Journal of Systematics and Evolution, 56(6), 576–599. doi:10.1111/jse.12299

Bertrand, D. & McPherson, R. A. (2018). Future hydrologic extremes of the red river basin. Journal of Applied Meteorology and Climatology, 57(6), 1321–1336. doi:10.1175/jamc-d-17-0346.1

Calkins, S. S., Elledge, N. C., Mueller, K. E., Marek, S. M., Couger, M., Elshahed, M. S., & Youssef, N. H. (2018). Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus pecoramyces ruminantium strain c1a. PeerJ, 6, e4276. doi:10.7717/peerj.4276. PMID: 29404209

Cao, X. & Jiang, H. (2018). Building a platform for predicting functions of serine protease-related proteins in drosophila melanogaster and other insects. Insect Biochemistry and Molecular Biology, 103, 53–69. doi:10.1016/j.ibmb.2018.10.006. PMID: 30367934

Chandran, P. (2018). Novel molecular simulation approach to liquid-liquid equilibria and application to the design of desalination solvents (Master’s thesis, Oklahoma State University). HDL: 11244/317818

Chandran, P. & Shah, J. K. (2018). A molecular simulation approach to the computation of mutual solubility of water and organic liquids: Application to fatty acids. Fluid Phase Equilibria, 472, 48–55. doi:10.1016/j.fluid.2018.05.002

Chen, X., Feng, Y., Zhong, W., Sun, B., & Tao, F. (2018). Numerical investigation of particle deposition in a triple bifurcation airway due to gravitational sedimentation and inertial impaction. Powder Technology, 323, 284–293. doi:10.1016/j.powtec.2017.09.050

Couger, B., Weirick, T., Damásio, A. R. L., Segato, F., Polizeli, M. D. L. T. D. M., de Almeida, R. S. C., Goldman, G. H., & Prade, R. A. (2018). The genome of a thermo tolerant, pathogenic albino aspergillus fumigatus. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.01827

Couger, M. B., Arévalo, L., & Campbell, P. (2018). A high quality genome for mus spicilegus, a close relative of house mice with unique social and ecological adaptations. G3: GENES, GENOMES, GENETICS, 8(7), 2145–2152. doi:10.1534/g3.118.200318. PMID: 29794166

Curtis, J. T., Assefa, S., Francis, A., & Köhler, G. A. (2018). Fecal microbiota in the female prairie vole (microtus ochrogaster). PLOS ONE, 13(3), e0190648. doi:10.1371/journal.pone.0190648. PMID: 29579049

Das, S., Vraspir, L., Zhou, W., Durica, D. S., & Mykles, D. L. (2018). Transcriptomic analysis of differentially expressed genes in the molting gland (y-organ) of the blackback land crab, gecarcinus lateralis, during molt-cycle stage transitions. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 28, 37–53. doi:10.1016/j.cbd.2018.06.001. PMID: 29940393

Day, J. I., Singh, K., Trinh, W., & Weaver, J. D. (2018). Visible light mediated generation of trans-arylcyclohexenes and their utilization in the synthesis of cyclic bridged ethers. Journal of the American Chemical Society, 140(31), 9934–9941. doi:10.1021/jacs.8b04642. PMID: 30001489

DeSilva, C. (2018). Calculating band structures for organic semiconductors (Bachelor’s Thesis, Oklahoma State University). HDL: 11244/317124

Dhakal, K., Kakani, V. G., & Linde, E. (2018). Climate change impact on wheat production in the southern great plains of the US using downscaled climate data. Atmospheric and Climate Sciences, 08(02), 143–162. doi:10.4236/acs.2018.82011

Dick, R. P., Dick, L. K., Deng, S., Li, X., Kandeler, E., Poll, C., Freeman, C., Jones, T. G., Weintraub, M. N., Esseili, K. A., & Saxena, J. (2018). Cross-laboratory comparison of fluorimetric microplate and colorimetric bench-scale soil enzyme assays. Soil Biology and Biochemistry, 121, 240–248. doi:10.1016/j.soilbio.2017.12.020

DiPasquale, M., Francisco, C. A., Mermin, J., Schweig, J., & Sosa, G. (2018). The rees algebra of a two-borel ideal is koszul. Proceedings of the American Mathematical Society, 147(2), 467–479. doi:10.1090/proc/13966

Espindola, A. S., Schneider, W., Cardwell, K. F., Carrillo, Y., Hoyt, P. R., Marek, S. M., Melouk, H. A., & Garzon, C. D. (2018). Inferring the presence of aflatoxin-producing aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool. PLOS ONE, 13(10), e0198575. doi:10.1371/journal.pone.0198575. PMID: 30325975

Feng, Y. (2018). Create the individualized digital twin for noninvasive precise pulmonary healthcare. Significances of Bioengineering & Biosciences, 1(2). doi:10.31031/sbb.2018.01.000507

Feng, Y., Chen, X., & Yang, M. (2018). An in silico investigation of a lobe-specific targeted pulmonary drug delivery method. In 2018 design of medical devices conference. ASME. doi:10.1115/dmd2018-6928

Feng, Y., Zhao, J., Kleinstreuer, C., Wang, Q., Wang, J., Wu, D. H., & Lin, J. (2018). An in silico inter-subject variability study of extra-thoracic morphology effects on inhaled particle transport and deposition. Journal of Aerosol Science, 123, 185–207. doi:10.1016/j.jaerosci.2018.05.010

Fennell, C. J., Ghousifam, N., Haseleu, J. M., & Gappa-Fahlenkamp, H. (2018). Computational signaling protein dynamics and geometric mass relations in biomolecular diffusion. The Journal of Physical Chemistry B, 122(21), 5599–5609. doi:10.1021/acs.jpcb.7b11846. PMID: 29510047

Fetkovich, E. J. (2018). Shear-wave reflection imaging of glacial-deposit aquifers in northern illinois (Master’s thesis, Oklahoma State University). HDL: 11244/319628

Fishbein, M., Livshultz, T., Straub, S. C. K., Simões, A. O., Boutte, J., McDonnell, A., & Foote, A. (2018). Evolution on the backbone: Apocynaceae phylogenomics and new perspectives on growth forms, flowers, and fruits. American Journal of Botany, 105(3), 495–513. doi:10.1002/ajb2.1067. PMID: 29733432

Fishbein, M., Straub, S. C. K., Boutte, J., Hansen, K., Cronn, R. C., & Liston, A. (2018). Evolution at the tips: Asclepias phylogenomics and new perspectives on leaf surfaces. American Journal of Botany, 105(3), 514–524. doi:10.1002/ajb2.1062. PMID: 29693728

Grachet, N. G., Couger, M., Young, C., Hartson, S., Garzon, C., Marek, S., & Walker, N. (2018). The genomes of ophiosphaerella spp. reveal new insights into the bermudagrass spring dead spot pathosystem. In Phytopathology (Vol. 108, 10, pp. 111–112). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.

Guruacharya, A. (2018). Panama: A tool for ion channel biophysics simulation. doi:10.1101/202051

Haghnegahdar, A. (2018). Development of a multiscale numerical model with two human pulmonary health applications (Master’s thesis, Oklahoma State University). HDL: 11244/320959

Haghnegahdar, A., Feng, Y., Chen, X., & Lin, J. (2018). Computational analysis of deposition and translocation of inhaled nicotine and acrolein in the human body with e-cigarette puffing topographies. Aerosol Science and Technology, 52(5), 483–493. doi:10.1080/02786826.2018.1447644. PMID: 30381781

Hayatifar, A., Shumaker, F. A., Komanduri, S. P., Hallenbeck, S. A., Rheingold, A. L., & Weinert, C. S. (2018). Synthesis of the elusive branched fluoro-oligogermane (Ph₃Ge)₃GeF: A structural, spectroscopic, electrochemical, and computational study. Organometallics, 37(12), 1852–1859. doi:10.1021/acs.organomet.8b00095

Hu, L., Ma, L. M., Zheng, S., He, X., Hammack, T. S., Brown, E. W., & Zhang, G. (2018). Development of a novel loop-mediated isothermal amplification (LAMP) assay for the detection of salmonella ser. enteritidis from egg products. Food Control, 88, 190–197. doi:10.1016/j.foodcont.2018.01.006

Kaphle, A., Borunda, M. F., & Hari, P. (2018). Influence of cobalt doping on residual stress in ZnO nanorods. Materials Science in Semiconductor Processing, 84, 131–137. doi:10.1016/j.mssp.2018.05.019

Kapoor, U. (2018). Ionic liquids: The importance of local structures at micro- and mesoscale and descriptors to tune them (Doctoral dissertation, Oklahoma State University). HDL: 11244/320939

Kapoor, U. & Shah, J. K. (2018a). Effect of molecular solvents of varying polarity on the self-assembly of 1-n-dodecyl-3-methylimidazolium octylsulfate ionic liquid. Journal of Theoretical and Computational Chemistry, 17(03), 1840004. doi:10.1142/s0219633618400047

Kapoor, U. & Shah, J. K. (2018b). Molecular origins of the apparent ideal CO₂ solubilities in binary ionic liquid mixtures. The Journal of Physical Chemistry B, 122(42), 9763–9774. doi:10.1021/acs.jpcb.8b08223. PMID: 30281297

Kapoor, U. & Shah, J. K. (2018c). Thermophysical properties of imidazolium-based binary ionic liquid mixtures using molecular dynamics simulations. Journal of Chemical & Engineering Data, 63(7), 2512–2521. doi:10.1021/acs.jced.7b01028

Kottke, T., Xie, A., Larsen, D. S., & Hoff, W. D. (2018). Photoreceptors take charge: Emerging principles for light sensing. Annual Review of Biophysics, 47(1), 291–313. doi:10.1146/annurev-biophys-070317-033047

Kröger, C., MacKenzie, K. D., Alshabib, E. Y., Kirzinger, M. W., Suchan, D. M., Chao, T.-C., Akulova, V., Miranda-CasoLuengo, A. A., Monzon, V. A., Conway, T., Sivasankaran, S. K., Hinton, J. C., Hokamp, K., & Cameron, A. (2018). The primary transcriptome, small RNAs and regulation of antimicrobial resistance in acinetobacter baumannii ATCC 17978. Nucleic Acids Research, 46(18), 9684–9698. doi:10.1093/nar/gky603

Liang, Y., Li, Y., & Zhang, B. (2018). Bayesian nonparametric inference for panel count data with an informative observation process. Biometrical Journal, 60(3), 583–596. doi:10.1002/bimj.201700176. PMID: 29468723

Lim, A., Naidenov, B., Bates, H., Willyerd, K., Snider, T., Couger, M. B., Chen, C., & Ramachandran, A. (2018). Genomic surveillance for antimicrobial resistance in mannheimia haemolytica using nanopore single molecule sequencing technology. doi:10.1101/395087

Lu, Y., Moradi, E., & Balasundaram, B. (2018). Correction to: Finding a maximum k-club using the k-clique formulation and canonical hypercube cuts. Optimization Letters, 12(8), 1959–1969. doi:10.1007/s11590-018-1273-7

Ma, J. & Balasundaram, B. (2018). On the chance-constrained minimum spanning k-core problem. Journal of Global Optimization. doi:10.1007/s10898-018-0714-2

Mamun, S. A., Lu, C., & Jayaraman, B. (2018). Extreme learning machines as encoders for sparse reconstruction. Fluids, 3(4), 88. doi:10.3390/fluids3040088

Materer, N. F., Apblett, A., Kadossov, E. B., Bussan, D., Bobo, M., Kupgan, G., & Dyer, D. (2018). Experimental and computation studies of the reaction of hydrogen peroxide and methyl hydroperoxide on molybdenum hydrogen bronze surfaces. Topics in Catalysis, 61(9-11), 1183–1192. doi:10.1007/s11244-018-0942-1

Maulik, R. [R.], San, O. [O.], & Behera, R. (2018). An adaptive multilevel wavelet framework for scale-selective WENO reconstruction schemes. International Journal for Numerical Methods in Fluids, 87(5), 239–269. doi:10.1002/fld.4489

Maulik, R. [R.], San, O. [O.], Rasheed, A. [A.], & Vedula, P. (2018a). Data-driven deconvolution for large eddy simulations of kraichnan turbulence. Physics of Fluids, 30(12), 125109. doi:10.1063/1.5079582

Maulik, R. [R.], San, O. [O.], Rasheed, A. [A.], & Vedula, P. (2018b). Subgrid modelling for two-dimensional turbulence using neural networks. Journal of Fluid Mechanics, 858, 122–144. doi:10.1017/jfm.2018.770

Maulik, R. [Romit] & San, O. [Omer]. (2018a). A dynamic closure modeling framework for large eddy simulation using approximate deconvolution: Burgers equation. Cogent Physics, 5(1). doi:10.1080/23311940.2018.1464368

Maulik, R. [Romit] & San, O. [Omer]. (2018b). Explicit and implicit LES closures for burgers turbulence. Journal of Computational and Applied Mathematics, 327, 12–40. doi:10.1016/j.cam.2017.06.003

Maulik, R. [Romit], San, O., & Bach, C. K. (2018). A computational investigation of the effect of ground clearance in vertical ducting systems - ashrae r-1743. In International high performance building conference, paper 308. Retrieved from https://docs.lib.purdue.edu/ihpbc/308

McDonnell, A., Parks, M., & Fishbein, M. (2018). Multilocus phylogenetics of new world milkweed vines (apocynaceae, asclepiadoideae, gonolobinae). Systematic Botany, 43(1), 77–96. doi:10.1600/036364418x697021

Neeman, H., Kalyvaki, M., Mizumoto, C., Park, J., Schwartz, A. Z., Simms, J. L., Vania, R., Al-Azzawi, H. M., Bergstrom, A., Braiterman, Z. K., Brunson, D., Colbry, D., Colmenares, E., Fuller, A. N., & Gesing, S. (2018). Progress update on the development and implementation of the advanced cyberinfrastructure research & education facilitators virtual residency program. In Proceedings of the practice and experience on advanced research computing - PEARC ’18. ACM Press. doi:10.1145/3219104.3219117

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Pleinert, M.-O., von Zanthier, J., & Agarwal, G. S. (2018). Phase control of the quantum statistics of collective emission. Physical Review A, 97(2). doi:10.1103/physreva.97.023831

Qiao, H., Feng, X., Escobar, L. E., Peterson, A. T., Soberón, J., Zhu, G., & Papeş, M. (2018). An evaluation of transferability of ecological niche models. Ecography, 42(3), 521–534. doi:10.1111/ecog.03986

Rahman, S., Rasheed, A. [Adil], & San, O. (2018). A hybrid analytics paradigm combining physics-based modeling and data-driven modeling to accelerate incompressible flow solvers. Fluids, 3(3), 50. doi:10.3390/fluids3030050

Rahman, S., San, O. [Omer], & Rasheed, A. (2018). A hybrid approach for model order reduction of barotropic quasi-geostrophic turbulence. Fluids, 3(4), 86. doi:10.3390/fluids3040086

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San, O. [Omer] & Maulik, R. [Romit]. (2018c). Neural network closures for nonlinear model order reduction. Advances in Computational Mathematics, 44(6), 1717–1750. doi:10.1007/s10444-018-9590-z

San, O. [Omer] & Maulik, R. [Romit]. (2018d). Stratified kelvin–helmholtz turbulence of compressible shear flows. Nonlinear Processes in Geophysics, 25(2), 457–476. doi:10.5194/npg-25-457-2018

Scholtz, R., Archer, S. R., Fuhlendorf, S. D., Buitenwerf, R., Tanner, E. P., & Polo, J. A. (2018). Woody plant dynamics in fragmented landscapes of the great plains, usa. In 2018 esa annual meeting (august 5–10). ESA.

Scholtz, R., Polo, J. A., Fuhlendorf, S. D., Engle, D. M., & Weir, J. R. (2018). Woody plant encroachment mitigated differentially by fire and herbicide. Rangeland Ecology & Management, 71(2), 239–244. doi:10.1016/j.rama.2017.10.001

Shyamal, S., Das, S., Guruacharya, A., Mykles, D. L., & Durica, D. S. (2018). Transcriptomic analysis of crustacean molting gland (y-organ) regulation via the mTOR signaling pathway. Scientific Reports, 8(1). doi:10.1038/s41598-018-25368-x. PMID: 29743490

Singh, K., Fennell, C. J., Coutsias, E. A., Latifi, R., Hartson, S., & Weaver, J. D. (2018). Light harvesting for rapid and selective reactions: Click chemistry with strain-loadable alkenes. Chem, 4(1), 124–137. doi:10.1016/j.chempr.2017.11.007

Smith, G. H. (2018). Exploring critical conformations: State searching and sampling in both germanium chains and ice (Master’s thesis, Oklahoma State University). HDL: 11244/321000

Stone, C. L., Frederick, R. D., Tooley, P. W., Luster, D. G., Campos, B., Winegar, R. A., Melcher, U., Fletcher, J., & Blagden, T. (2018). Annotation and analysis of the mitochondrial genome of coniothyrium glycines, causal agent of red leaf blotch of soybean, reveals an abundance of homing endonucleases. PLOS ONE, 13(11), e0207062. doi:10.1371/journal.pone.0207062

Tang, Z., Fan, F., Wang, X., Shi, X., Deng, S., & Wang, D. (2018). Mercury in rice ( oryza sativa l. ) and rice-paddy soils under long-term fertilizer and organic amendment. Ecotoxicology and Environmental Safety, 150, 116–122. doi:10.1016/j.ecoenv.2017.12.021

Timmons, C., Pai, K., Jacob, J., Zhang, G., & Ma, L. M. (2018). Inactivation of salmonella enterica, shiga toxin-producing escherichia coli, and listeria monocytogenes by a novel surface discharge cold plasma design. Food Control, 84, 455–462. doi:10.1016/j.foodcont.2017.09.007

Wang, B., Park, H., Xu, K., & Wang, Q. (2018). Prediction of lower flammability limits of blended gases based on quantitative structure–property relationship. Journal of Thermal Analysis and Calorimetry, 132(2), 1125–1130. doi:10.1007/s10973-017-6941-9

Wang, B., Xu, K., & Wang, Q. (2018). Prediction of upper flammability limits for fuel mixtures using quantitative structure–property relationship models. Chemical Engineering Communications, 206(2), 247–253. doi:10.1080/00986445.2018.1483350

Wijayasekara, D., Hoyt, P., Gimondo, A., Dunn, B., Thapa, A., Jones, H., & Verchot, J. (2018). Molecular characterization of two badnavirus genomes associated with canna yellow mottle disease. Virus Research, 243, 19–24. doi:10.1016/j.virusres.2017.10.001

2017

Akin, D., Liu, F. C., Maji, A., Neeman, H., Reynolds, R., Sherman, A. H., Showerman, M., Tillotson, J., Towns, J., Turner, G., Zimmerman, B., Belgin, M., Bouvet, T. A., Bright, N. C., Harrell, S., Haymore, B., Jennings, M., Knepper, R., & LaPine, D. (2017). Linux clusters institute workshops. In Proceedings of the HPC systems professionals workshop on - HPCSYSPROS’17. ACM Press. doi:10.1145/3155105.3155108

Alam, M. I. & Jaiswal, P. (2017). Near surface characterization using VP/VSand poisson’s ratio from seismic refractions. Journal of Environmental & Engineering Geophysics, 22(2), 101–109. doi:10.2113/jeeg22.2.101

Alderman, P. D. & Stanfill, B. (2017). Quantifying model-structure- and parameter-driven uncertainties in spring wheat phenology prediction with bayesian analysis. European Journal of Agronomy, 88, 1–9. doi:10.1016/j.eja.2016.09.016

Alexander, A. S. & Santhanakrishnan, A. (2017). Trapped cylindrical flow with multiple inlets for savonius vertical axis wind turbines. Journal of Fluids Engineering, 140(4), 044501. doi:10.1115/1.4038166

Almutairi, M. M. R. (2017). Genetic diversity among hard red winter wheat cultivars and experimental lines and their association with water limitation (Doctoral dissertation, Oklahoma State University). HDL: 11244/300066

Alpas, H., Yeni, F., Soyer, Y., & Fletcher, J. (2017). Recent outbreaks of human pathogens on plants (hpops) on fresh produce – lessons learned from the practice. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙4

Andreason, S. A., Arif, M., Brown, J. K., Ochoa-Corona, F., Fletcher, J., & Wayadande, A. (2017). Single-target and multiplex discrimination of whiteflies (hemiptera: Aleyrodidae) bemisia tabaci and trialeurodes vaporariorum with modified priming oligonucleotide thermodynamics. Journal of Economic Entomology, 110(4), 1821–1830. doi:10.1093/jee/tox125

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Ayalew, S., Confer, A. W., Hansen, R. D., & Couger, M. B. (2017a). Genome sequence of a spontaneous nonhemolytic mutant of mannheimia haemolytica 16041065 GH. Genome Announcements, 5(14). doi:10.1128/genomea.01720-16

Ayalew, S., Confer, A. W., Hansen, R. D., & Couger, M. B. (2017b). Genome sequence of mannheimia haemolytica serotype 1 strain 16041065 BH. Genome Announcements, 5(14). doi:10.1128/genomea.01721-16

Ayalew, S., Confer, A. W., Hartson, S. D., Canaan, P. J., Payton, M., & Couger, B. (2017). Proteomic and bioinformatic analyses of putative mannheimia haemolytica secretome by liquid chromatography and tandem mass spectrometry. Veterinary Microbiology, 203, 73–80. doi:10.1016/j.vetmic.2017.02.011

Babu, B., Washburn, B. K., Ertek, T. S., Miller, S. H., Riddle, C. B., Knox, G. W., Ochoa-Corona, F. M., Olson, J., Katırcıoğlu, Y. Z., & Paret, M. L. (2017). A field based detection method for rose rosette virus using isothermal probe-based reverse transcription-recombinase polymerase amplification assay. Journal of Virological Methods, 247, 81–90. doi:10.1016/j.jviromet.2017.05.019

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Bertrand, D. (2017). Exploring future hydrologic extremes of the red river basin (Master’s thesis, University of Oklahoma). HDL: 11244/51914

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Bryant, D. M., Johnson, K., DiTommaso, T., Tickle, T., Couger, M. B., Payzin-Dogru, D., Lee, T. J., Leigh, N. D., Kuo, T.-H., Davis, F. G., Bateman, J., Bryant, S., Guzikowski, A. R., Tsai, S. L., Coyne, S., Ye, W. W., Freeman, R. M., Peshkin, L., Tabin, C. J., Regev, A., Haas, B. J., & Whited, J. L. (2017). A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors. Cell Reports, 18(3), 762–776. doi:10.1016/j.celrep.2016.12.063

Cao, X., Gulati, M., & Jiang, H. (2017). Serine protease-related proteins in the malaria mosquito, anopheles gambiae. Insect Biochemistry and Molecular Biology, 88, 48–62. doi:10.1016/j.ibmb.2017.07.008

Cao, X. & Jiang, H. (2017). An analysis of 67 RNA-seq datasets from various tissues at different stages of a model insect, manduca sexta. BMC Genomics, 18(1). doi:10.1186/s12864-017-4147-y

Cho, J., Grogg, K., Min, C. H., Zhu, X., Paganetti, H., Lee, H. C., & Fakhri, G. E. (2017). Feasibility study of using fall-off gradients of early and late PET scans for proton range verification. Medical Physics, 44(5), 1734–1746. doi:10.1002/mp.12191

Chuba, D., Goyder, D., Chase, M. W., & Fishbein, M. (2017). Phylogenetics of the african asclepias complex (apocynaceae) based on three plastid DNA regions. Systematic Botany, 42(1), 148–159. doi:10.1600/036364417x694539

Dai, S. (2017). Density functional theory and time-dependent dft modeling of organic photovoltaic materials (Doctoral dissertation, Oklahoma State University). HDL: 11244/300088

Davis, T. (2017). Parallelization of the clark, colbourn, and johnson maximum clique algorithm for unit disk graphs (Doctoral dissertation, Oklahoma State University).

Day, J. I. & Weaver, J. D. (2017). Selective and scalable perfluoroarylation of nitroalkanes. The Journal of Organic Chemistry, 82(13), 6801–6810. doi:10.1021/acs.joc.7b00962

Deng, S., Dick, R., Freeman, C., Kandeler, E., & Weintraub, M. N. (2017). Comparison and standardization of soil enzyme assay for meaningful data interpretation. Journal of Microbiological Methods, 133, 32–34. doi:10.1016/j.mimet.2016.12.013

Dhakal, K. [K.], Linde, E., Kakani, V. G., Alderman, P. D., Brunson, D., Ochsner, T. E., & Carver, B. (2017). Impact of Climate Change on Potential, Attainable, and Actual Wheat Yield in Oklahoma. AGU Fall Meeting Abstracts. Retrieved from http://adsabs.harvard.edu/abs/2017AGUFMGC41D1041D

Dhakal, K. [Kundan]. (2017). Spatially explicit modeling of switchgrass and wheat in oklahoma (Doctoral dissertation, Oklahoma State University).

Doust, A. N., Mauro-Herrera, M., Hodge, J. G., & Stromski, J. (2017). The c4 model grass setaria is a short day plant with secondary long day genetic regulation. Frontiers in Plant Science, 8. doi:10.3389/fpls.2017.01062

Ebrahimi, P. & Jaiswal, P. (2017). Directional filter aided sub-basalt interpretation: A case study from the faroe-shetland basin. Journal of Applied Geophysics, 137, 82–91. doi:10.1016/j.jappgeo.2016.12.004

Farag, I. F. [Ibrahim F.], Youssef, N. H., & Elshahed, M. S. (2017). Global distribution patterns and pangenomic diversity of the candidate phylum “latescibacteria” (WS3). Applied and Environmental Microbiology, 83(10). doi:10.1128/aem.00521-17

Farag, I. F. [Ibrahim Farouk]. (2017). Exploring the habitat distribution, metabolic diversities and potential ecological roles of candidate phyla “aminicenantes”(op8) and “latescibacteria”(ws3) (Doctoral dissertation, Oklahoma State University). HDL: 11244/300056

Feng, X., Castro, M. C., Linde, E., & Papeş, M. (2017). Armadillo mapper. Tropical Conservation Science, 10, 194008291772413. doi:10.1177/1940082917724133

Feng, X. & Papeş, M. (2017). Can incomplete knowledge of species’ physiology facilitate ecological niche modelling? a case study with virtual species. Diversity and Distributions, 23(10), 1157–1168. doi:10.1111/ddi.12606

Feng, Y. (2017). A new patient-specific pulmonary drug targeted delivery method to treat lung cancer using e-cigarette technology. In Proceedings of the AIChE 2017 annual meeting.

Feng, Y., Chen, X., Xu, Z., & Haghnegahdar, A. (2017). Intersubject variability in pulmonary drug delivery efficiency to target lung tumors at different lobes: An in-silico study. In Proceedings of the biomedical engineering society 2017 annual meeting.

Feng, Y. & Haghnegahdar, A. (2017). A new pulmonary drug targeted delivery method for lung diseases treatment: An in-silico study. In Proceedings of the oklahoma center for respiratory and infectious diseases 4th annual retreat.

Feng, Y., Haghnegahdar, A., & Chen, X. (2017). A computational multiphase flow model to predict the transport and deposition of inhaled flu virus-laden droplets in human respiratory tracts for early infection diagnosis. In Proceedings of the AIChE 2017 annual meeting.

Feng, Y., Wang, J. [Jun], & Chen, X. (2017). Noninvasive diagnostics for the early detection of lower respiratory diseases: An in-silico study. In Proceedings of the AIChE 2017 annual meeting.

Feng, Y., Wang, J. [Jun], Haghnegahdar, A., & Bezerra, M. (2017). Numerical investigation of occupational-related metal aerosol transmission and deposition patterns in a virtual human respiratory system. In Proceedings of the american association for aerosol research 2017 annual conference. Retrieved from http://aaarabstracts.com/2017/AbstractBook.pdf

Feng, Y., Zhao, J., Chen, X., & Lin, J. (2017). An in silico subject-variability study of upper airway morphological influence on the airflow regime in a tracheobronchial tree. Bioengineering, 4(4), 90. doi:10.3390/bioengineering4040090

Fletcher, J., Gamliel, A., Stack, J. P., Dehne, H. W., Isack, Y., & Moncrief, I. (2017). Applications and assessment of microbial forensics in a field outbreak of salmon blotch of onion in israel. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙13

Foster, C. (2017). A computational approach for accessing phosphorylated response regulator conformations and signaling complexes involving the fungal phosphorelay protein ypd1 (Doctoral dissertation, University of Oklahoma). HDL: 11244/44926

Francisco, C. A., Mermin, J., & Schweig, J. (2017). Boij-söderberg and veronese decompositions. Journal of Commutative Algebra, 9(3), 367–386. doi:10.1216/jca-2017-9-3-367

Frazier, A., Hemingway, B., & Brasher, J. (2017). Land surface heterogeneity and tornado formation: A comparison of tornado alley and dixie alley. Journal of Climatology & Weather Forecasting, 05(02). doi:10.4172/2332-2594.1000203

Ge, X., Deng, S., Zhu, L., Li, Y., Jia, Z., Tian, Y., & Tang, L. (2017). Response of nitrogen mineralization dynamics and biochemical properties to litter amendments to soils of a poplar plantation. Journal of Forestry Research, 29(4), 915–924. doi:10.1007/s11676-017-0523-3

Gehan, M. A., Fahlgren, N., Abbasi, A., Berry, J. C., Callen, S. T., Chavez, L., Doust, A. N., Feldman, M. J., Gilbert, K. B., Hodge, J. G., Hoyer, J. S., Lin, A., Liu, S., Lizárraga, C., Lorence, A., Miller, M., Platon, E., Tessman, M., & Sax, T. (2017). PlantCV v2: Image analysis software for high-throughput plant phenotyping. PeerJ, 5, e4088. doi:10.7717/peerj.4088

Haghnegahdar, A. & Feng, Y. (2017a). Development of a multiscale cfpd-pbtk model for lung deposition and whole-body translocation of inhaled nicotine and acrolein in e-cigarette aerosols. In Proceedings of the 2017 american society for engineering education midwest section conference.

Haghnegahdar, A. & Feng, Y. (2017b). The translocation of nicotine from human lung to systemic regions due to e-cigarette aerosol inhalation: A numerical study. In Cmbe proceedings (pp. 1096–1099). Retrieved from https://www.compbiomed.net/2017/cmbe-proceedings.htm

Harris, A., Chen, P.-T., Xu, X.-W., Zhang, J.-Q., Yang, X., & Wen, J. (2017). A molecular phylogeny of staphyleaceae: Implications for generic delimitation and classical biogeographic disjunctions in the family. Journal of Systematics and Evolution, 55(2), 124–141. doi:10.1111/jse.12236

Harris, A., Dee, J., & Palmer, M. W. (2017). The effects of taxonomic rank on climatic calibrations: A test using extant floras of united states counties. Review of Palaeobotany and Palynology, 244, 316–324. doi:10.1016/j.revpalbo.2017.02.002

He, X., Cao, X., He, Y., Bhattarai, K., Rogers, J., Hartson, S., & Jiang, H. (2017). Hemolymph proteins of anopheles gambiae larvae infected by escherichia coli. Developmental & Comparative Immunology, 74, 110–124. doi:10.1016/j.dci.2017.04.009

Hendershot, M. E. & Liang, Y. (2017). Estimating judicial accomplishment: Applying the legislative accomplishment strategy to the decisions of the supreme court. Justice System Journal, 38(3), 256–276. doi:10.1080/0098261x.2017.1296386

Ismail, A. [A.], Abdelnaby, A., & Larson, T. (2017). High-resolution p- and s-wave seismic reflection followed by engineering modeling for geotechnical site characterization in southern illinois. Journal of Environmental and Engineering Geophysics, 22(4), 375–384. doi:10.2113/JEEG22.4.375

Ismail, A. [Ahmed], Thomason, J., & Atekwana, E. (2017). Shear-wave seismic reflection for improved detection of ground subsidence and scouring features. In International conference on engineering geophysics, al ain, united arab emirates, 9-12 october 2017. Society of Exploration Geophysicists. doi:10.1190/iceg2017-002

Jackson, C., Couger, M., Prabhakaran, M., Ramachandriya, K., Canaan, P., & Fathepure, B. (2017). Isolation and characterization of Rhizobium sp. strain YS-1r that degrades lignin in plant biomass. Journal of Applied Microbiology, 122(4), 940–952. doi:10.1111/jam.13401

Jaiswal, P., Gregg, J. M., Parks, S., Holman, R., Mohammadi, S., & Grammer, G. M. (2017). Evidence of fault/fracture ”hydrothermal” reservoirs in the southern midcontinent mississippian carbonates. Mississippian Reservoirs of the Midcontinent: AAPG memoir, 116.

Jaiswal, P., Holman, R., & Grammer, M. (2017). Pitfalls in three-dimensional seismic interpretation: Footprints of an irregular source–receiver layout. AAPG Bulletin, 101(11), 1747–1758. doi:10.1306/02071716056

Judkins, M. E. (2017). Conservation genomics of north american bald (haliaeetus leucocephalus) and golden (aquila chrysaetos) eagles (Doctoral dissertation, Oklahoma State University). HDL: 11244/300060

Kapoor, U. & Shah, J. K. (2017). Globular, sponge-like to layer-like morphological transition in 1-n-alkyl-3-methylimidazolium octylsulfate ionic liquid homologous series. The Journal of Physical Chemistry B, 122(1), 213–228. doi:10.1021/acs.jpcb.7b08397. PMID: 29202582

Kibble, G. A. [Geoffrey A.], Jacob, J. D., Alexander, A., Elbing, B. R., Ireland, P., & Black, B. (2017). Aerodynamic investigation of the conformal vortex generator. In 47th AIAA fluid dynamics conference. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2017-3117

Kibble, G. A. [Geoffrey Alexander]. (2017). Experimental and computational investigation of the conformal vortex generator (Master’s thesis, Oklahoma State University). HDL: 11244/300000

Kozak, M. & Feng, Y. (2017). Non-newtonian fluid flow patterns in a customized parallel plate flow chamber: An in-silico study using a computational fluid dynamics model. In Proceedings of the 2017 american society for engineering education midwest section conference.

Liu, M., Lei, L., Miao, F., Powers, C., Zhang, X., Deng, J., Tadege, M., Carver, B. F., & Yan, L. (2017). The STENOFOLIA gene from medicago alters leaf width, flowering time and chlorophyll content in transgenic wheat. Plant Biotechnology Journal, 16(1), 186–196. doi:10.1111/pbi.12759

Lu, C. (2017). Sparse data-driven modeling framework for nonlinear fluid flows (Doctoral dissertation, Oklahoma State University).

Lu, C. & Jayaraman, B. (2017). Data-driven modeling for nonlinear fluid flows. In 23rd AIAA computational fluid dynamics conference. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2017-3628

Ma, L. M., Fletcher, J., Mumford, J. D., Holt, J., & Leach, A. W. (2017). Decision tool for assessing the likelihood of an intentional foodborne illness outbreak. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙9

Mandelli, F., Couger, M. B., Paixão, D. A. A., Machado, C. B., Carnielli, C. M., Aricetti, J. A., Polikarpov, I., Prade, R., Caldana, C., Leme, A. F. P., Mercadante, A. Z., Riaño-Pachón, D. M., & Squina, F. M. (2017). Thermal adaptation strategies of the extremophile bacterium thermus filiformis based on multi-omics analysis. Extremophiles, 21(4), 775–788. doi:10.1007/s00792-017-0942-2

Maulik, R. [R.] & San, O. [O.]. (2017). A dynamic framework for functional parameterisations of the eddy viscosity coefficient in two-dimensional turbulence. International Journal of Computational Fluid Dynamics, 31(2), 69–92. doi:10.1080/10618562.2017.1287902

Maulik, R. [Romit] & San, O. [Omer]. (2017a). A dynamic subgrid-scale modeling framework for boussinesq turbulence. International Journal of Heat and Mass Transfer, 108, 1656–1675. doi:10.1016/j.ijheatmasstransfer.2017.01.028

Maulik, R. [Romit] & San, O. [Omer]. (2017b). A novel dynamic framework for subgrid scale parametrization of mesoscale eddies in quasigeostrophic turbulent flows. Computers and Mathematics with Applications, 74(3), 420–445. doi:10.1016/j.camwa.2017.04.016

Maulik, R. [Romit] & San, O. [Omer]. (2017c). A stable and scale-aware dynamic modeling framework for subgrid-scale parameterizations of two-dimensional turbulence. Computers & Fluids, 158, 11–38. doi:10.1016/j.compfluid.2016.11.015

Maulik, R. [Romit] & San, O. [Omer]. (2017d). Resolution and energy dissipation characteristics of implicit LES and explicit filtering models for compressible turbulence. Fluids, 2(2), 14. doi:10.3390/fluids2020014

McDonnell, A. (2017). Phylogeny and evolution of new world milkweed vines (apocynaceae,gonolobianae) and the resurrection of chthamalia (Doctoral dissertation, Oklahoma State University).

Melstrom, R. T. (2017). Where to drill? the petroleum industry’s response to an endangered species listing. Energy Economics, 66, 320–327. doi:10.1016/j.eneco.2017.06.028

Miao, Z. & Balasundaram, B. (2017). Approaches for finding cohesive subgroups in large-scale social networks via maximum k -plex detection. Networks, 69(4), 388–407. doi:10.1002/net.21745

Moktan Tamang, H. B. (2017). Structure and dynamics studies of membrane and non-membrane proteins using nmr and md simulations (Doctoral dissertation, Oklahoma State University). HDL: 11244/300065

Moktan, H. & Zhou, D. H. (2017). Wing 1 of protein HOP2 is as important as helix 3 in DNA binding by MD simulation. Journal of Biomolecular Structure and Dynamics, 36(7), 1853–1866. doi:10.1080/07391102.2017.1333458. PMID: 28531371

Morrison, J. M., Baker, K. D., Zamor, R. M., Nikolai, S., Elshahed, M. S., & Youssef, N. H. (2017). Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (grand lake, OK, USA). PLOS ONE, 12(5), e0177488. doi:10.1371/journal.pone.0177488

Morrison, J. M., Murphy, C. L., Baker, K., Zamor, R. M., Nikolai, S. J., Wilder, S., Elshahed, M. S., & Youssef, N. H. (2017). Microbial communities mediating algal detritus turnover under anaerobic conditions. PeerJ, 5, e2803. doi:10.7717/peerj.2803

Mumford, J. D., Gullino, M. L., Stack, J. P., Fletcher, J., & Quinlan, M. M. (2017). The need for international perspectives to solve global biosecurity challenges. Cham: Springer International Publishing. doi:10.1007/978-3-319-46897-6˙18

Ni, J., Dadras, S., Lam, W. K., Shrestha, R. K., Sadgrove, M., Wimberger, S., & Summy, G. S. (2017). Hamiltonian ratchets with ultra-cold atoms. Annalen der Physik, 529(8), 1600335. doi:10.1002/andp.201600335

Pan, X., Richardson, M. D., Deng, S., Kremer, R. J., English, J. T., Mihail, J. D., Sams, C. E., Scharf, P. C., Veum, K. S., & Xiong, X. (2017). Effect of organic amendment and cultural practice on large patch occurrence and soil microbial community. Crop Science, 57(4), 2263. doi:10.2135/cropsci2016.09.0809

Passow, C. N., Brown, A. P., Arias-Rodriguez, L., Yee, M.-C., Sockell, A., Schartl, M., Warren, W. C., Bustamante, C., Kelley, J. L., & Tobler, M. (2017). Complexities of gene expression patterns in natural populations of an extremophile fish (poecilia mexicana , poeciliidae). Molecular Ecology, 26(16), 4211–4225. doi:10.1111/mec.14198

Passow, C. N., Henpita, C., Shaw, J. H., Quackenbush, C. R., Warren, W. C., Schartl, M., Arias-Rodriguez, L., Kelley, J. L., & Tobler, M. (2017). The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish. Molecular Ecology, 26(22), 6384–6399. doi:10.1111/mec.14360

Pleinert, M.-O., von Zanthier, J., & Agarwal, G. S. (2017). Hyperradiance from collective behavior of coherently driven atoms. Optica, 4(7), 779. doi:10.1364/optica.4.000779

Qiao, L., Zou, C. B., Gaitán, C. F., Hong, Y., & McPherson, R. A. (2017). Analysis of precipitation projections over the climate gradient of the arkansas red river basin. Journal of Applied Meteorology and Climatology, 56(5), 1325–1336. doi:10.1175/jamc-d-16-0201.1

Qiao, L., Zou, C. B., Stebler, E., & Will, R. E. (2017). Woody plant encroachment reduces annual runoff and shifts runoff mechanisms in the tallgrass prairie, USA. Water Resources Research, 53(6), 4838–4849. doi:10.1002/2016wr019951

Ratcliffe, B., El-Dien, O. G., Cappa, E. P., Porth, I., Klápště, J., Chen, C., & El-Kassaby, Y. A. (2017). Single-step BLUP with varying genotyping effort in open-pollinated picea glauca. G3: GENES, GENOMICS, GENETICS, 7(3), 935–942. doi:10.1534/g3.116.037895

Rydzak, P., Ochoa Corona, F., Whitfield, A. E., & Wayadande, A. C. (2017). Detection and differentiation of arthropod-transmitted viruses of cereal crops using multiplex pcr and high resolution melting. In Abstracts of presentations at the 2017 APS annual meeting (Vol. 107, 12S, S5.1–S5.142). Scientific Societies. doi:10.1094/phyto-107-12-s5.1

Saha, S., Hosmani, P. S., Villalobos-Ayala, K., Miller, S., Shippy, T., Flores, M., Rosendale, A., Cordola, C., Bell, T., Mann, H., DeAvila, G., DeAvila, D., Moore, Z., Buller, K., Ciolkevich, K., Nandyal, S., Mahoney, R., Voorhis, J. V., Dunlevy, M., Farrow, D., Hunter, D., Morgan, T., Shore, K., Guzman, V., Izsak, A., Dixon, D. E., Cridge, A., Cano, L., Cao, X., Jiang, H., Leng, N., Johnson, S., Cantarel, B. L., Richards, S., English, A., Shatters, R. G., Childers, C., Chen, M.-J., Hunter, W., Cilia, M., Mueller, L. A., Munoz-Torres, M., Nelson, D., Poelchau, M. F., Benoit, J. B., Wiersma-Koch, H., D’Elia, T., & Brown, S. J. (2017). Improved annotation of the insect vector of citrus greening disease: Biocuration by a diverse genomics community. Database, 2017. doi:10.1093/database/bax032

Salinas Villacís, K. V., Espitia-Navarro, H., Garcia-Suarez, J., & Ochoa Corona, F. (2017). Introducing primerchecker, a pcr primer performance graphic display generator. In Abstracts of presentations at the 2017 APS annual meeting (Vol. 107, 12S, S5.1–S5.142). Scientific Societies. doi:10.1094/phyto-107-12-s5.1

San, O. [Omer] & Vedula, P. (2017). Generalized deconvolution procedure for structural modeling of turbulence. Journal of Scientific Computing, 75(2), 1187–1206. doi:10.1007/s10915-017-0583-8

Sandoval Pineda, J. F., Ochoa Corona, F., & Torres Rojas, E. (2017). Evaluacion de diferentes metodos de extraccion de ARN a partir del hongo nativo xylaria sp. Revista Colombiana de Biotecnologia, 19(1), 42–52. doi:10.15446/rev.colomb.biote.v19n1.57114

Scholtz, R., Polo, J., Fuhlendorf, S., & Duckworth, G. (2017). Land cover dynamics influence distribution of breeding birds in the great plains, USA. Biological Conservation, 209, 323–331. doi:10.1016/j.biocon.2017.02.028

Schukei, R. (2017). Study of ensemble learning with AdaBoost and NEAT (Doctoral dissertation, Oklahoma State University). HDL: 11244/300070

Shah, J. K., Marin-Rimoldi, E., Mullen, R. G., Keene, B. P., Khan, S., Paluch, A. S., Rai, N., Romanielo, L. L., Rosch, T. W., Yoo, B., & Maginn, E. J. (2017). Cassandra: An open source monte carlo package for molecular simulation. Journal of Computational Chemistry, 38(19), 1727–1739. doi:10.1002/jcc.24807

SHARMA, R. (2017). On the numerical solutions of 2d boussinesq equations with fractional dissipation. Neural, Parallel, and Scientific Computations, 25, 497–507. Retrieved from http://www.dynamicpublishers.com/Neural/NPSC2017/P16.497-508_SharmaR.pdf

Shukla, K. & Jaiswal, P. (2017). Wavefield-based regularization of multicomponent seismic data. In Seg technical program expanded abstracts 2017 (pp. 2575–2579). doi:10.1190/segam2017-17794904.1

Shukla, K., Jaiswal, P., Carcione, J., & Santos, J. (2017). Effect of capillary pressure on seismic velocities. In SEG technical program expanded abstracts 2017. Society of Exploration Geophysicists. doi:10.1190/segam2017-17751776.1

Smith, P. M. & Borunda, M. F. (2017). Torsional potential energy surfaces of dinitrobenzene isomers. Advances in Condensed Matter Physics, 2017, 1–7. doi:10.1155/2017/3296845

Song, J., Carver, B. F., Powers, C., Yan, L., Klápště, J., El-Kassaby, Y. A., & Chen, C. (2017). Practical application of genomic selection in a doubled-haploid winter wheat breeding program. Molecular Breeding, 37(10). doi:10.1007/s11032-017-0715-8

Thistlethwaite, F. R., Ratcliffe, B., Klápště, J., Porth, I., Chen, C., Stoehr, M. U., & El-Kassaby, Y. A. (2017). Genomic prediction accuracies in space and time for height and wood density of douglas-fir using exome capture as the genotyping platform. BMC Genomics, 18(1). doi:10.1186/s12864-017-4258-5

Van Den Bussche, R. A., Judkins, M. E., Montague, M. J., & Warren, W. C. (2017). A resource of genome-wide single nucleotide polymorphisms (snps) for the conservation and management of golden eagles. Journal of Raptor Research, 51(3), 368–377. doi:10.3356/jrr-16-47.1

Wang, B., Zhou, L., Xu, K., & Wang, Q. (2017). Fast prediction of minimum ignition energy from molecular structure using simple QSPR model. Journal of Loss Prevention in the Process Industries, 50, 290–294. doi:10.1016/j.jlp.2017.10.010

Wang, J. [Jiliang], Wu, S., Geng, J., & Jaiswal, P. (2017). Acoustic wave attenuation in the gas hydrate-bearing sediments of well GC955h, gulf of mexico. Marine Geophysical Research, 39(4), 509–522. doi:10.1007/s11001-017-9336-1

Williamson, C. H. [Casey H]. (2017). Computational studies of 2d diffusion and water nucleation (Master’s thesis, Oklahoma State University). HDL: 11244/317713

Williamson, C. H. [Casey H.], Hall, J. R., & Fennell, C. J. (2017). Two-dimensional molecular simulations using rose potentials. Journal of Molecular Liquids, 228, 11–18. doi:10.1016/j.molliq.2016.10.016

Yeh, K., Monagin, C., & Fletcher, J. (2017). Promoting scientific transparency to facilitate the safe and open international exchange of biological materials and electronic data. Tropical Medicine and Infectious Disease, 2(4), 57. doi:10.3390/tropicalmed2040057

2016

Alam, M. D. I. (2016). Near-surface characterization using p- and s-wave tomography (Doctoral dissertation, Oklahoma State University). HDL: 11244/54470

Andreason, S., Schneider, W., & Wayadande, A. (2016). Detection of plant pathogens within insect vector transcriptome sequencing datasets. In Proceedings of the 2016 annual meeting of the entomological society of america southwestern branch. Retrieved from https://www.entsoc.org/PDF/2016/2016_Southwest_Branch_Program_Book.pdf

Avramov, A. P., Couger, M., Hartley, E. L., Land, C., Wellendorf, R., Hanafy, R. A., Budd, C., French, D. P., Hoff, W. D., & Youssef, N. (2016). Draft genome sequence of microbacterium oleivorans strain wellendorf implicates heterotrophic versatility and bioremediation potential. Genomics Data, 10, 54–60. doi:10.1016/j.gdata.2016.09.005

Babu, B., Jeyaprakash, A., Jones, D., Schubert, T. S., Baker, C., Washburn, B. K., Miller, S. H., Poduch, K., Knox, G. W., Ochoa-Corona, F. M., & Paret, M. L. (2016). Development of a rapid, sensitive TaqMan real-time RT-PCR assay for the detection of rose rosette virus using multiple gene targets. Journal of Virological Methods, 235, 41–50. doi:10.1016/j.jviromet.2016.05.010

Babu, K., Bajc, B., & Saad, S. (2016). New class of SO(10) models for flavor. Physical Review D, 94(1). doi:10.1103/physrevd.94.015030

Behafarid, F., Brasseur, J. G., Vijayakumar, G., Jayaraman, B., & Wang, Y. (2016). Computational Studies of Drug Release, Transport and Absorption in the Human Intestines. In Aps meeting abstracts (A20.004). Retrieved from http://adsabs.harvard.edu/abs/2016APS..DFDA20004B

BLAGDEN, T., SCHNEIDER, W., MELCHER, U., DANIELS, J., & FLETCHER, J. (2016). Adaptation and validation of e-probe diagnostic nucleic acid analysis for detection of escherichia coli O157:H7 in metagenomic data from complex food matrices. Journal of Food Protection, 79(4), 574–581. doi:10.4315/0362-028x.jfp-15-440

Brini, E., Paranahewage, S., Fennell, C., & Dill, K. (2016). Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the sampl5 molecules. Journal of Computer-Aided Molecular Design, 30(11), 1067–1077. doi:10.1007/s10822-016-9961-9

Buchanan, J. W., Reecy, J. M., Garrick, D. J., Duan, Q., Beitz, D. C., Koltes, J. E., Saatchi, M., Koesterke, L., & Mateescu, R. G. (2016). Deriving gene networks from SNP associated with triacylglycerol and phospholipid fatty acid fractions from ribeyes of angus cattle. Frontiers in Genetics, 7. doi:10.3389/fgene.2016.00116

Calkins, S., Couger, M., Jackson, C., Zandler, J., Hudgins, G. C., Hanafy, R. A., Budd, C., French, D. P., Hoff, W. D., & Youssef, N. (2016). Draft genome sequence of staphylococcus hominis strain hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. Genomics Data, 10, 91–96. doi:10.1016/j.gdata.2016.10.003

Calkins, S. & Youssef, N. H. (2016). Insights into the utility of the focal adhesion scaffolding proteins in the anaerobic fungus orpinomyces sp. c1a. PLOS ONE, 11(9), e0163553. doi:10.1371/journal.pone.0163553

Cao, X. (2016). Rna-seq assisted gene modeling and annotation, transcriptome study and functional analysis of stress responsive peptides of manduca sexta (Doctoral dissertation, Oklahoma State University). HDL: 11244/300277

Cho, J., Campbell, P., Wang, M., Alqathami, M., Mawlawi, O., Kerr, M., & Cho, S. H. (2016). Feasibility of hydrogel fiducial markers forin vivoproton range verification using PET. Physics in Medicine and Biology, 61(5), 2162–2176. doi:10.1088/0031-9155/61/5/2162

Cho, J., Gonzalez-Lepera, C., Manohar, N., Kerr, M., Krishnan, S., & Cho, S. H. (2016). Quantitative investigation of physical factors contributing to gold nanoparticle-mediated proton dose enhancement. Physics in Medicine and Biology, 61(6), 2562–2581. doi:10.1088/0031-9155/61/6/2562

Cho, J., Ibbott, G. S., Kerr, M. D., Amos, R. A., Stingo, F. C., Marom, E. M., Truong, M. T., Palacio, D. M., Betancourt, S. L., Erasmus, J. J., DeGroot, P. M., Carter, B. W., Gladish, G. W., Sabloff, B. S., Benveniste, M. F., Godoy, M. C., Patil, S., Sorensen, J., & Mawlawi, O. R. (2016). Characterizing proton-activated materials to develop PET-mediated proton range verification markers. Physics in Medicine and Biology, 61(11), N291–N310. doi:10.1088/0031-9155/61/11/n291

Cho, J., Wang, M., Gonzalez-Lepera, C., Mawlawi, O., & Cho, S. H. (2016). Development of bimetallic (zn@au) nanoparticles as potential PET-imageable radiosensitizers. Medical Physics, 43(8Part1), 4775–4788. doi:10.1118/1.4958961

Couger, M. [M.B.], Wright, A., Lutter, E., & Youssef, N. (2016). Draft genome sequences of five pseudomonas aeruginosa clinical strains isolated from sputum samples from cystic fibrosis patients. Genome Announcements, 4(1). doi:10.1128/genomea.01528-15

Couger, M., Fletcher, J., & Schneider, W. (2016). Harnessing wgs for forensic analysis: Bioinformatics pipelines and data. In Abstracts of special session presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.164–S4.183). Scientific Societies. doi:10.1094/phyto-106-12-s4.164

Al-Dakheeli, H. (2016). Hydro-mechanical analysis of shrinkage and shrinkage cracking due to environmental loads on saturated to unsaturated expansive soils (Master’s thesis, Oklahoma State University). HDL: 11244/300313

Daniel, J., Gallucci Mazziero, B., Dunn, B., & Ochoa-Corona, F. (2016). A preemptive detection system to screen water for the presence of plant viruses. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Daniels, J. (2016). Capturing pathogenic plant waterborne viruses: A novel tool for agricultural diagnostics using three model viruses (Doctoral dissertation, Oklahoma State University). HDL: 11244/300279

Das, S. & Mykles, D. L. (2016). A comparison of resources for the annotation of a de novo assembled transcriptome in the molting gland (y-organ) of the blackback land crab, gecarcinus lateralis. Integrative and Comparative Biology, 56(6), 1103–1112. doi:10.1093/icb/icw107

Das, S., Pitts, N. L., Mudron, M. R., Durica, D. S., & Mykles, D. L. (2016). Transcriptome analysis of the molting gland (y-organ) from the blackback land crab, gecarcinus lateralis. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 17, 26–40. doi:10.1016/j.cbd.2015.11.003

Ding, T. & Melcher, U. (2016). Influences of plant species, season and location on leaf endophytic bacterial communities of non-cultivated plants. PLOS ONE, 11(3), e0150895. doi:10.1371/journal.pone.0150895

Dobhal, S., Olson, J. D., Arif, M., Suarez, J. A. G., & Ochoa-Corona, F. M. (2016). A simplified strategy for sensitive detection of rose rosette virus compatible with three RT-PCR chemistries. Journal of Virological Methods, 232, 47–56. doi:10.1016/j.jviromet.2016.01.013

dos Santos, H. B., Bezerra, T. M. S., Pradella, J. G. C., Delabona, P., Lima, D., Gomes, E., Hartson, S. D., Rogers, J., Couger, B., & Prade, R. (2016). Myceliophthora thermophila m77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass. AMB Express, 6(1). doi:10.1186/s13568-016-0276-y

Doust, A. N. (2016). The effect of photoperiod on flowering time, plant architecture, and biomass in setaria. In Genetics and genomics of setaria (pp. 197–210). Springer International Publishing. doi:10.1007/978-3-319-45105-3˙12

Espindola, A. S. (2016). Eukaryotic plant pathogen detection through high throughput dna/rna sequencing data analysis (Doctoral dissertation, Oklahoma State University). HDL: 11244/300237

Foster, C. A. [Clay A.] & West, A. H. (2016). Use of restrained molecular dynamics to predict the conformations of phosphorylated receiver domains in two-component signaling systems. Proteins: Structure, Function, and Bioinformatics, 85(1), 155–176. doi:10.1002/prot.25207

Foster, C. A. [Clay Allen]. (2016). A computational approach for accessing phosphorylated response regulator conformations and signaling complexes involving the fungal phosphorelay protein ypd1 (Doctoral dissertation, University of Oklahoma). HDL: 11244/44926

Frahm, K. A., Peffer, M. E., Zhang, J. Y., Luthra, S., Chakka, A. B., Couger, M. B., Chandran, U. R., Monaghan, A. P., & DeFranco, D. B. (2016). Research resource: The dexamethasone transcriptome in hypothalamic embryonic neural stem cells. Molecular Endocrinology, 30(1), 144–154. doi:10.1210/me.2015-1258

Gallucci Mazziero, B. (2016). Waterborne plant virus sampling and detection in aqueous environment. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Garcia Suarez, J., Dobhal, S., & Ochoa-Corona, F. (2016). Virus detection of tobamovirus with wide spectrum degenerate oligonucleotides by td rt-pcr high resolution melting. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

García-Suarez, J. A., Dobhal, S., & Ochoa-Corona, F. M. (2016). Virus detection of tobamovirus with wide spectrum degenerate oligonucleotides by td-rt-pcr high resolution melting. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/files/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf

Habiger, J., Watts, D., & Anderson, M. (2016). Multiple testing with heterogeneous multinomial distributions. Biometrics, 73(2), 562–570. doi:10.1111/biom.12586

Hanafy, R. A., Couger, M., Baker, K., Murphy, C., O’Kane, S. D., Budd, C., French, D. P., Hoff, W. D., & Youssef, N. (2016). Draft genome sequence of micrococcus luteus strain o’kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates. Genomics Data, 9, 148–153. doi:10.1016/j.gdata.2016.08.006

Harris, A., Fu, C., Xiang, Q.-Y. (, Holland, L., & Wen, J. (2016). Testing the monophyly of aesculus l. and billia peyr., woody genera of tribe hippocastaneae of the sapindaceae. Molecular Phylogenetics and Evolution, 102, 145–151. doi:10.1016/j.ympev.2016.06.001

Hu, L., Ma, L. M., Zheng, S., He, X., Wang, H., Brown, E. W., Hammack, T. S., & Zhang, G. (2016). Evaluation of 3m molecular detection system and ANSR pathogen detection system for rapid detection ofSalmonellafrom egg products. Poultry Science, pew399. doi:10.3382/ps/pew399

Jayaraman, B., Brasseur, J., Haupt, S., & Lee, J. (2016). Deviations from Equilibrium in Daytime Atmospheric Boundary Layer Turbulence arising from Nonstationary Mesoscale Forcing. In Aps meeting abstracts (p. M13.003). Retrieved from http://adsabs.harvard.edu/abs/2016APS..DFDM13003J

Kanost, M. R., Arrese, E. L., Cao, X., Chen, Y.-R., Chellapilla, S., Goldsmith, M. R., Grosse-Wilde, E., Heckel, D. G., Herndon, N., Jiang, H., Papanicolaou, A., Qu, J., Soulages, J. L., Vogel, H., Walters, J., Waterhouse, R. M., Ahn, S.-J., Almeida, F. C., An, C., Aqrawi, P., Bretschneider, A., Bryant, W. B., Bucks, S., Chao, H., Chevignon, G., Christen, J. M., Clarke, D. F., Dittmer, N. T., Ferguson, L. C., Garavelou, S., Gordon, K. H., Gunaratna, R. T., Han, Y., Hauser, F., He, Y., Heidel-Fischer, H., Hirsh, A., Hu, Y., Jiang, H., Kalra, D., Klinner, C., König, C., Kovar, C., Kroll, A. R., Kuwar, S. S., Lee, S. L., Lehman, R., Li, K., Li, Z., Liang, H., Lovelace, S., Lu, Z., Mansfield, J. H., McCulloch, K. J., Mathew, T., Morton, B., Muzny, D. M., Neunemann, D., Ongeri, F., Pauchet, Y., Pu, L.-L., Pyrousis, I., Rao, X.-J., Redding, A., Roesel, C., Sanchez-Gracia, A., Schaack, S., Shukla, A., Tetreau, G., Wang, Y., Xiong, G.-H., Traut, W., Walsh, T. K., Worley, K. C., Wu, D., Wu, W., Wu, Y.-Q., Zhang, X., Zou, Z., Zucker, H., Briscoe, A. D., Burmester, T., Clem, R. J., Feyereisen, R., Grimmelikhuijzen, C. J., Hamodrakas, S. J., Hansson, B. S., Huguet, E., Jermiin, L. S., Lan, Q., Lehman, H. K., Lorenzen, M., Merzendorfer, H., Michalopoulos, I., Morton, D. B., Muthukrishnan, S., Oakeshott, J. G., Palmer, W., … Blissard, G. W. (2016). Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, manduca sexta. Insect Biochemistry and Molecular Biology, 76, 118–147. doi:10.1016/j.ibmb.2016.07.005

Kapoor, U. & Shah, J. K. (2016). Preferential ionic interactions and microscopic structural changes drive nonideality in binary ionic liquid mixtures as revealed from molecular simulations. Industrial & Engineering Chemistry Research, 55(51), 13132–13146. doi:10.1021/acs.iecr.6b03314

Katsalirou, E., Deng, S., Gerakis, A., & Nofziger, D. L. (2016). Long-term management effects on soil p, microbial biomass p, and phosphatase activities in prairie soils. European Journal of Soil Biology, 76, 61–69. doi:10.1016/j.ejsobi.2016.07.001

Konemann, C. E., Kard, B. M., Payton, M. E., Deng, S. P., Warren, J. G., & Wilson, T. M. (2016). CO2emissions from soil on oklahoma’s tallgrass prairie preserve in the presence or absence of termites (isoptera: Rhinotermitidae). The American Midland Naturalist, 176(1), 60–71. doi:10.1674/0003-0031-176.1.60

Lam, W. K. (2016). Phase-modulation Induced Quantum Accelerator Modes (Doctoral dissertation, Oklahoma State University). Retrieved from http://adsabs.harvard.edu/abs/2016PhDT.......227L

Larrea-Sarmiento, A. E., Arif, M., Olmedo-Velarde, A., Olson, J., & Ochoa-Corona, F. M. (2016). Sensitive detection and discrimination of hpwmov, wsmv and trimv using multiplex rt-pcr (part ii): Discrimination and detection of populations by high resolution melting. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/files/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf

Li, X. (2016). Microbial communities in soil ecosystems of under different land uses (Doctoral dissertation, Oklahoma State University).

Ma, J., Pajouh, F. M., Balasundaram, B., & Boginski, V. (2016). The minimum spanningk-core problem with bounded CVaR under probabilistic edge failures. INFORMS Journal on Computing, 28(2), 295–307. doi:10.1287/ijoc.2015.0679

Maulik, R. & San, O. (2016). Dynamic modeling of the horizontal eddy viscosity coefficient for quasigeostrophic ocean circulation problems. Journal of Ocean Engineering and Science, 1(4), 300–324. doi:10.1016/j.joes.2016.08.002

Mazziero, B. G. (2016). Assessment of a virus sampling and detection method for water testing using pepino mosaic virus (Master’s thesis, Oklahoma State University). HDL: 11244/300362

Miao, Z. (2016). Combinatorial and global optimization approaches to the maximum quasi-clique problem (Doctoral dissertation, Oklahoma State University).

Miller, N. T., Fuller, D., Couger, M., Bagazinski, M., Boyne, P., Devor, R. C., Hanafy, R. A., Budd, C., French, D. P., Hoff, W. D., & Youssef, N. (2016). Draft genome sequence of pseudomonas moraviensis strain devor implicates metabolic versatility and bioremediation potential. Genomics Data, 9, 154–159. doi:10.1016/j.gdata.2016.08.004

Moghadam, F., Couger, M., Russ, B., Ramsey, R., Hanafy, R. A., Budd, C., French, D. P., Hoff, W. D., & Youssef, N. (2016). Draft genome sequence and detailed analysis of pantoea eucrina strain russ and implication for opportunistic pathogenesis. Genomics Data, 10, 63–68. doi:10.1016/j.gdata.2016.09.006

Mohanty, R. P. (2016). Pollen biology and landscape ecology of juniperus: An integrative study using quantitave molecular approaches, ultrastructure and habitat modeling (Doctoral dissertation, University of Tulsa). Retrieved from http://argo.library.okstate.edu/login?url=https://search.proquest.com/docview/1830451754?accountid=4117

MOLINA CÁRDENAS, S., Salazar Aguirre, A., Ochoa-Corona, F., & Olson, J. (2016). Fluorogenic detection of plant viruses by helicase dependent amplification with self-quenched primers. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Moncrief, I., Garzon, C., Marek, S., Stack, J., Gamliel, A., Garrido, P., Proaño, F., Gard, M., Dehne, H., & Fletcher, J. (2016). Development of simple sequence repeat (SSR) markers for discrimination among isolates of fusarium proliferatum. Journal of Microbiological Methods, 126, 12–17. doi:10.1016/j.mimet.2016.03.013

Moore, J., Yang, R., Wheeler, K., & Youssef, N. (2016). Sequencing the microbial world one bug at a time. Research Reports from Life Science Freshmen Research Scholars, 2(1). Retrieved from https://undergradsciencejournals.okstate.edu/index.php/LSFRS/article/view/2979

Moradi, E. (2016). Decomposition algorithms for detecting low-diameter clusters in graphs (Doctoral dissertation, Oklahoma State University). HDL: 11244/48850

Mortazavian, H. (2016). Polymer adsorption on silica and wettability of graphene oxide surfaces, experiments and simulations (Doctoral dissertation, Oklahoma State University). HDL: 11244/48853

Mortazavian, H., Fennell, C. J., & Blum, F. D. (2016). Surface bonding is stronger for poly(methyl methacrylate) than for poly(vinyl acetate). Macromolecules, 49(11), 4211–4219. doi:10.1021/acs.macromol.6b00521

Mykles, D. L., Burnett, K. G., Durica, D. S., Joyce, B. L., McCarthy, F. M., Schmidt, C. J., & Stillman, J. H. (2016). Resources and recommendations for using transcriptomics to address grand challenges in comparative biology. Integrative and Comparative Biology, 56(6), 1183–1191. doi:10.1093/icb/icw083

Neeman, H., Ramadugu, S. K., Romanella, A., Rush, J., Sherman, A. H., Stengel, B., Voss, D., Bergstrom, A., Brunson, D., Ganote, C., Gray, Z., Guilfoos, B., Kalescky, R., Lemley, E., & Moore, B. G. (2016). The advanced cyberinfrastructure research and education facilitators virtual residency. In Proceedings of the XSEDE16 on diversity, big data, and science at scale - XSEDE16. ACM Press. doi:10.1145/2949550.2949584

Ochoa-Corona, F. M., Daniels, J., Gallucci-Mazziero, B., Carrillo-Tarazona, Y., Cardozo-Burgos, C., & Ochoa, F. M. (2016). Toward broad detection of plant waterborne viruses. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/files/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf

Ochoa-Corona, F. & Carrillo Tarazona, Y. (2016). Validation of rt-pcr high resolution melting as a detection method of tombusvirus. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Ochoa-Corona, F., Salazar Aguirre, A. A. M., Molina Cárdenas, S., Olmedo-Velarde, A., Dobhal, S., Olson, J., Babu, B., & Paret, M. (2016). Development of efficient diagnostic tools to enable rapid, easy-to-use, accurate and affordable detection of rose rosette virus. In Abstracts of special session presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.164–S4.183). Scientific Societies. doi:10.1094/phyto-106-12-s4.164

Olmedo-Velarde, A., Larrea-Sarmiento, A. E., Flores, F. J., Elbeaino, T., & Ochoa-Corona, F. M. (2016). Toward a broad detection of emaravirusspecies: Qrt-pcr-hrm and endpoint rt-pcr. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/files/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf

Olmedo-Velarde, A., Larrea-Sarmiento, A. E., & Ochoa-Corona, F. M. (2016). Discriminating potexvirus species by qrt-pcr coupled to high resolution melting. In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/files/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf

Olmedo-Velarde, A. & Ochoa-Corona, F. (2016). Discriminating potexvirus species by rt-pcr coupled to high resolution melting. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Olmedo-Velarde, A., Ochoa-Corona, F., & Elbeaino, T. (2016). Toward broad detection of emaraviruses: Endpoint rt-pcr. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Pajouh, F. M., Balasundaram, B., & Hicks, I. V. (2016). On the 2-club polytope of graphs. Operations Research, 64(6), 1466–1481. doi:10.1287/opre.2016.1500

Pajouh, F. M., Moradi, E., & Balasundaram, B. (2016). Detecting large risk-averse 2-clubs in graphs with random edge failures. Annals of Operations Research, 249(1-2), 55–73. doi:10.1007/s10479-016-2279-0

Paranahewage, S. S., Gierhart, C. S., & Fennell, C. J. (2016). Predicting water-to-cyclohexane partitioning of the SAMPL5 molecules using dielectric balancing of force fields. Journal of Computer-Aided Molecular Design, 30(11), 1059–1065. doi:10.1007/s10822-016-9950-z

Peña Zuniga, L., Ochoa-Corona, F., & Ali, A. (2016). Multiplex rt-pcr detection of eight viruses infecting cucurbits and discrimination using high resolution melting analysis. In Abstracts of presentations at the 2016 APS annual meeting (Vol. 106, 12S, S4.1–S4.163). Scientific Societies. doi:10.1094/phyto-106-12-s4.1

Pleinert, M. .-.-O., von Zanthier, J., & Agarwal, G. S. (2016). Phase control of the quantum statistics of collective emission. doi:10.48550/ARXIV.1608.00137

Salazar, A., Molina, S., Ochoa-Corona, F. M., & Olson, J. (2016). Detección de rose rosette virus medianteel método de amplificación isotérmica de ácidos nucleicos lamp (loop-mediated isothermal amplification). In Libro de memorias, CIBB III: Congreso internacional de biotecnología y biodiversidad 2016. Retrieved from http://www.cibb.espol.edu.ec/sites/cibb.espol.edu.ec/files/archivos/LIBRO%20DE%20MEMORIAS%20CIBB2016.pdf

Schneider, W. D. H., Gonçalves, T. A., Uchima, C. A., Couger, M. B., Prade, R., Squina, F. M., Dillon, A. J. P., & Camassola, M. (2016). Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass. Biotechnology for Biofuels, 9(1). doi:10.1186/s13068-016-0476-3

Segato, F., Couger, B., Prade, R. A., Correr, F. H., Corrêa, F. E., Margarido, G. R. A., & Polikarpov, I. (2016). The synergic strategies employed by aspergillus niveus and myceliophthora thermophila to degrade sugarcane bagasse. In Symposium on biotechnology for fuels and chemicals - sbfc. Society for Industrial Microbiology - SIMB. Retrieved from https://sim.confex.com/sim/38th/webprogram/Paper31988.html

Selvaraju, S., Adhikari, S., Hopson, R. A., Dai, S., Rheingold, A. L., Borunda, M. F., & Nelson, T. L. (2016). Effects of structural variations on the optical and electronic properties of eumelanin-inspired small molecules. Journal of Materials Chemistry C, 4(18), 3995–3999. doi:10.1039/c5tc03982g

Singh, A., Fennell, C. J., & Weaver, J. D. (2016). Photocatalyst size controls electron and energy transfer: Selectable E/Z isomer synthesis via C–F alkenylation. Chemical Science, 7(11), 6796–6802. doi:10.1039/c6sc02422j

Timmons, C., Trees, E., Ribot, E. M., Gerner-Smidt, P., LaFon, P., Im, S., & Ma, L. M. (2016). Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-o157 shiga toxin-producing escherichia coli. Journal of Microbiological Methods, 125, 70–80. doi:10.1016/j.mimet.2016.04.005

Vijayakumar, G., Brasseur, J., Lavely, A. W., Jayaraman, B., & Craven, B. (2016). Interaction of atmospheric turbulence with blade boundary layer dynamics on a 5mw wind turbine using blade-boundary-layer-resolved CFD with hybrid URANS-LES. In 34th wind energy symposium. American Institute of Aeronautics and Astronautics. doi:10.2514/6.2016-0521

Wang, B., Yi, H., Xu, K., & Wang, Q. (2016). Prediction of the self-accelerating decomposition temperature of organic peroxides using QSPR models. Journal of Thermal Analysis and Calorimetry, 128(1), 399–406. doi:10.1007/s10973-016-5922-8

Wang, B., Zhou, L., Xu, K., & Wang, Q. (2016). Prediction of minimum ignition energy from molecular structure using quantitative structure–property relationship (QSPR) models. Industrial & Engineering Chemistry Research, 56(1), 47–51. doi:10.1021/acs.iecr.6b04347

Zhao, S., Chen, X., Deng, S., Dong, X., Song, A., Yao, J., Fang, W., & Chen, F. (2016). The effects of fungicide, soil fumigant, bio-organic fertilizer and their combined application on chrysanthemum fusarium wilt controlling, soil enzyme activities and microbial properties. Molecules, 21(4), 526. doi:10.3390/molecules21040526

2015

Alam, M. M. (2015). Visual masking in natural scenes: Database, models, and an application to perceptual image coding (Doctoral dissertation, Oklahoma State University). HDL: 11244/45128

Balasundaram, B. [Baski]. (2015a). Cliques clubs. In Proceedings of a seminar series for the department of industrial and systems engineering at Texas A&M University.

Balasundaram, B. [Baski]. (2015b). On the 2-club polytope of graphs. In Proceedings of the 22nd international symposium on mathematical programming.

Branham, K. (2015). Use of ultra-high-density snp data for genetic evaluation of predicted feed intake, feed efficiency, carcass, and growth traits in hereford cattle (Master’s thesis, Oklahoma State University). HDL: 11244/45236

Brasseur, J., Jayaraman, B., Haupt, S., & Lee, J. (2015). Nonequilibrium Response of the Daytime Atmospheric Boundary Layer to Mesoscale Forcing. In Aps meeting abstracts (E21.001). Retrieved from http://adsabs.harvard.edu/abs/2015APS..DFDE21001B

Brunson, D., Akin, D., Alderman, P., Creager, G., Deaton, J., Dumancas, G., Evert, J., Fennell, C., Fondjo Fotou, F., Frinkle, K., Gentis, D., Hale, J., Hoyt, P., Lemley, E., Linde, E., George, L., Perdeep, M., Morris, M., Mosher, J., Schafer, J., Severini, H., Snow, J., Xiong, N., & Neeman, H. (2015). The oneoklahoma cyberinfrastructure initiative: A model for multi-institutional collaboration conference. OneOklahoma Cyberinfrastructure Initiative. National Science Foundation Workshop on The Role of Regional Organizations in Imporving Access to National Cyberinfrastructure, white paper. HDL: 11244/34794

Buchanan, J. W. [J. W.], Koltes, J. E., Reecy, J. M., & Mateescu, R. G. (2015). Deriving gene networks involving tenderness and sensory attributes in steaks from angus beef cattle. In Proceedings of the international plant and animal genome conference. Plant and Animal XXIII Conference, San Diego, CA.

Buchanan, J. W. [Justin William]. (2015). Genetic parameter estimation and gene network derivation for fatty acid traits in angus beef cattle (Doctoral dissertation, Oklahoma State University). HDL: 11244/45142

Cao, X., He, Y., Hu, Y., Wang, Y., Chen, Y.-R., Bryant, B., Clem, R. J., Schwartz, L. M., Blissard, G., & Jiang, H. (2015). The immune signaling pathways of manduca sexta. Insect Biochemistry and Molecular Biology, 62, 64–74. doi:10.1016/j.ibmb.2015.03.006

Cao, X., He, Y., Hu, Y., Zhang, X., Wang, Y., Zou, Z., Chen, Y., Blissard, G. W., Kanost, M. R., & Jiang, H. (2015). Sequence conservation, phylogenetic relationships, and expression profiles of nondigestive serine proteases and serine protease homologs in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 51–63. doi:10.1016/j.ibmb.2014.10.006

Cao, X. & Jiang, H. (2015). Integrated modeling of protein-coding genes in the manduca sexta genome using RNA-seq data from the biochemical model insect. Insect Biochemistry and Molecular Biology, 62, 2–10. doi:10.1016/j.ibmb.2015.01.007

Chaturvedula, N. (2015). Extreme compression for novelty detection in bandwidth constrained environments (Master’s thesis, Oklahoma State University). HDL: 11244/45147

Couger, M. B. [M. B.], Hanafy, R. A., Edens, C., Budd, C., French, D. P., Hoff, W. D., Elshahed, M. S., & Youssef, N. H. (2015). Draft genome of the arthrobacter sp. strain edens01. Genome Announcements, 3(6). doi:10.1128/genomea.01475-15

Couger, M. B. [M. B.], Hanafy, R. A., Mitacek, R. M., Budd, C., French, D. P., Hoff, W. D., Elshahed, M. S., & Youssef, N. H. (2015). The draft genome sequence of xanthomonas sp. strain mitacek01 expands the pangenome of a genus of plant pathogens. Genome Announcements, 3(6). doi:10.1128/genomea.01450-15

Couger, M. B. [M. B.], Hurlbut, A., Murphy, C. L., Budd, C., French, D. P., Hoff, W. D., Elshahed, M. S., & Youssef, N. H. (2015). Draft genome sequence of the environmental isolate chryseobacterium sp. hurlbut01. Genome Announcements, 3(5). doi:10.1128/genomea.01071-15

Couger, M. B. [M. B.], Youssef, N. H., Struchtemeyer, C. G., Liggenstoffer, A. S., & Elshahed, M. S. (2015). Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate orpinomyces sp. strain c1a. Biotechnology for Biofuels, 8(1). doi:10.1186/s13068-015-0390-0

Couger, M. B. [Matthew B]. (2015). Genomic and transcriptomic analysis of the anerobic fungus orpinomyces strain c1a, a versatile biodegrader of plant biomass (Doctoral dissertation, Oklahoma State University). HDL: 11244/54511

Dutta, M., Ali, A., & Melcher, U. (2015). Detection, discrimination and discovery of a new tobacco streak virus strain. Journal of Virological Methods, 221, 15–21. doi:10.1016/j.jviromet.2015.03.025

Espindola, A., Schneider, W., Hoyt, P. R., Marek, S. M., & Garzon, C. (2015). A new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes. International Journal of Data Mining and Bioinformatics, 12(2), 115. doi:10.1504/ijdmb.2015.069422

Francisco, C. A., Mermin, J., & Schweig, J. (2015). LCM lattices supporting pure resolutions. Proceedings of the American Mathematical Society, 144(6), 2315–2325. doi:10.1090/proc/12890

Gao, Y.-D., Harris, A., & He, X.-J. (2015). Morphological and ecological divergence of lilium and nomocharis within the hengduan mountains and qinghai-tibetan plateau may result from habitat specialization and hybridization. BMC Evolutionary Biology, 15(1). doi:10.1186/s12862-015-0405-2

He, Y., Cao, X., Li, K., Hu, Y., Chen, Y.-r., Blissard, G., Kanost, M. R., & Jiang, H. (2015). A genome-wide analysis of antimicrobial effector genes and their transcription patterns in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 23–37. doi:10.1016/j.ibmb.2015.01.015

Heisterkamp, D. R. (2015). Lambda consensus clustering. In 2015 ieee 14th international conference on machine learning and applications (icmla) (pp. 410–413). doi:10.1109/ICMLA.2015.172

Jayaraman, B., Brasseur, J., & Wang, Y. (2015). Influence of Non-homogeneous Particle Distributions on Drug Release in a Couette in vitro Dissolution Device. In Aps meeting abstracts (A40.002). Retrieved from http://adsabs.harvard.edu/abs/2015APS..DFDA40002J

Lin, P. (2015). Applicatioin of nuclear magnetic resonance to protein structure and protein-ligand interation studies (Doctoral dissertation, Oklahoma State University). HDL: 11244/45273

Ma, J. (2015). Proactive approaches for system design under uncertainty applied to network synthesis and capacity planning (Doctoral dissertation, Oklahoma State University). HDL: 11244/45364

Mandelli, F., Ramires, B. O., Couger, M. B., Paixão, D. A. A., Camilo, C. M., Polikarpov, I., Prade, R., Riaño-Pachón, D. M., & Squina, F. M. (2015). Draft genome sequence of the thermophile thermus filiformis ATCC 43280, producer of carotenoid-(di)glucoside-branched fatty acid (di)esters and source of hyperthermostable enzymes of biotechnological interest. Genome Announcements, 3(3). doi:10.1128/genomea.00475-15

Matyi, S. A., Hoyt, P. R., Ayoubi-Canaan, P., Hasan, N. A., & Gustafson, J. E. (2015). Draft genome sequence of strain ATCC 33958, reported to be elizabethkingia miricola. Genome Announcements, 3(4). doi:10.1128/genomea.00828-15

Miao, Z. (2015). On the lagrangian dual of the maximum quasiclique problem. In Proceedings of the 2015 informs annual meeting.

Moradi, E. & Balasundaram, B. [Balabhaskar]. (2015). Finding a maximum k-club using the k-clique formulation and canonical hypercube cuts. Optimization Letters, 12(8), 1947–1957. doi:10.1007/s11590-015-0971-7

Mortazavian, H., Fennell, C. J., & Blum, F. D. (2015). Structure of the interfacial region in adsorbed poly(vinyl acetate) on silica. Macromolecules, 49(1), 298–307. doi:10.1021/acs.macromol.5b02214

Nanugonda, S. S. B. (2015). Parallel implementation of a forecasting algorithm (Master’s thesis, Oklahoma State University). HDL: 11244/317818

Narayanan, B. (2015). Impact of replenishment frequency driven product allocation in a retail supply chain (Master’s thesis, Oklahoma State University). HDL: 11244/45288

Neeman, H., Lemley, E., Louthan, G., Monaco, G., Morris, M., Snow, J., Zimmerman, B., Adams, K., Alexander, J., Brunson, D., Calhoun, S. P., Deaton, J., Fotou, F. F., Frinkle, K., & Gray, Z. (2015). On fostering a culture of research cyberinfrastructure grant proposals within a community of service providers in an EPSCoR state. In Proceedings of the 2015 XSEDE conference on scientific advancements enabled by enhanced cyberinfrastructure - XSEDE ’15. ACM Press. doi:10.1145/2792745.2792764

Nicholson, S. J., Nickerson, M. L., Dean, M., Song, Y., Hoyt, P. R., Rhee, H., Kim, C., & Puterka, G. J. (2015). The genome of diuraphis noxia, a global aphid pest of small grains. BMC Genomics, 16(1). doi:10.1186/s12864-015-1525-1

Prabhakaran, M., Couger, M. B., Jackson, C. A., Weirick, T., & Fathepure, B. Z. (2015). Genome sequences of the lignin-degrading pseudomonas sp. strain YS-1p and rhizobium sp. strain YS-1r isolated from decaying wood. Genome Announcements, 3(2). doi:10.1128/genomea.00019-15

Rao, X.-J., Cao, X., He, Y., Hu, Y., Zhang, X., Chen, Y.-R., Blissard, G., Kanost, M. R., Yu, X.-Q., & Jiang, H. (2015). Structural features, evolutionary relationships, and transcriptional regulation of c-type lectin-domain proteins in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 75–85. doi:10.1016/j.ibmb.2014.12.006

Al-Rubaye, A. A. K., Couger, M. B., Ojha, S., Pummill, J. F., Koon, J. A., Wideman, R. F., & Rhoads, D. D. (2015). Genome analysis of staphylococcus agnetis, an agent of lameness in broiler chickens. PLOS ONE, 10(11), e0143336. doi:10.1371/journal.pone.0143336

Shyamal, S., Anilkumar, G., Bhaskaran, R., Doss, G., & Durica, D. (2015). Significant fluctuations in ecdysteroid receptor gene (EcR) expression in relation to seasons of molt and reproduction in the grapsid crab, metopograpsus messor (brachyura: Decapoda). General and Comparative Endocrinology, 211, 39–51. doi:10.1016/j.ygcen.2014.11.006

Tetreau, G., Cao, X., Chen, Y.-R., Muthukrishnan, S., Jiang, H., Blissard, G. W., Kanost, M. R., & Wang, P. (2015). Overview of chitin metabolism enzymes in manduca sexta: Identification, domain organization, phylogenetic analysis and gene expression. Insect Biochemistry and Molecular Biology, 62, 114–126. doi:10.1016/j.ibmb.2015.01.006

Tetreau, G., Dittmer, N. T., Cao, X., Agrawal, S., Chen, Y.-R., Muthukrishnan, S., Haobo, J., Blissard, G. W., Kanost, M. R., & Wang, P. (2015). Analysis of chitin-binding proteins from manduca sexta provides new insights into evolution of peritrophin a-type chitin-binding domains in insects. Insect Biochemistry and Molecular Biology, 62, 127–141. doi:10.1016/j.ibmb.2014.12.002

Utt, K. L., Rivero, P., Mehboudi, M., Harriss, E. O., Borunda, M. F., SanJuan, A. A. P., & Barraza-Lopez, S. (2015). Intrinsic defects, fluctuations of the local shape, and the photo-oxidation of black phosphorus. ACS Central Science, 1(6), 320–327. doi:10.1021/acscentsci.5b00244

Vemula, S. & Crick, C. (2015). Hadoop image processing framework. In 2015 IEEE international congress on big data. IEEE. doi:10.1109/bigdatacongress.2015.80

Vijayakumar, G., Lavely, A., Jayaraman, B., Craven, B., & Brasseur, J. (2015). Dominant mechanism of load fluctuations on a wind turbine in a realistic atmosphere through Hybrid URANS-LES. In Aps meeting abstracts (p. D28.004). Retrieved from http://adsabs.harvard.edu/abs/2015APS..DFDD28004V

Wang, Z. (2015). Parallel algorithm for finding all minimal maximum subsequences via random-walk theory (Doctoral dissertation, Oklahoma State University). HDL: 11244/45326

Weitemier, K., Straub, S. C., Fishbein, M., & Liston, A. (2015). Intragenomic polymorphisms among high-copy loci: A genus-wide study of nuclear ribosomal DNA inAsclepias(apocynaceae). PeerJ, 3, e718. doi:10.7717/peerj.718

Wongdhamma, W. (2015). Statistical models for detecting existence of obstructive sleep apnea, predicting its severity, and forecasting future episodes (Master’s thesis, Oklahoma State University). HDL: 11244/45388

Worcester, L. (2015). Phylogeny and biogeography of the podostemma clade, asclepias l. (apocynaceae) (Doctoral dissertation, Oklahoma State University).

Youssef, N. H., Couger, M., McCully, A. L., Criado, A. E. G., & Elshahed, M. S. (2015). Assessing the global phylum level diversity within the bacterial domain: A review. Journal of Advanced Research, 6(3), 269–282. doi:10.1016/j.jare.2014.10.005

Yukihara, E. G., Doull, B. A., Ahmed, M., Brons, S., Tessonnier, T., Jäkel, O., & Greilich, S. (2015). Time-resolved optically stimulated luminescence of Al₂O₃:C for ion beam therapy dosimetry. Physics in Medicine and Biology, 60(17), 6613–6638. doi:10.1088/0031-9155/60/17/6613

Zhang, X., He, Y., Cao, X., Gunaratna, R. T., Chen, Y.-r., Blissard, G., Kanost, M. R., & Jiang, H. (2015). Phylogenetic analysis and expression profiling of the pattern recognition receptors: Insights into molecular recognition of invading pathogens in manduca sexta. Insect Biochemistry and Molecular Biology, 62, 38–50. doi:10.1016/j.ibmb.2015.02.001

Zhang, X., Zheng, Y., Cao, X., Ren, R., Yu, X.-Q., & Jiang, H. (2015). Identification and profiling of manduca sexta microRNAs and their possible roles in regulating specific transcripts in fat body, hemocytes, and midgut. Insect Biochemistry and Molecular Biology, 62, 11–22. doi:10.1016/j.ibmb.2014.08.006

2014

Alam, M. M., Vilankar, K. P., Field, D. J., & Chandler, D. M. (2014). Local masking in natural images: A database and analysis. Journal of Vision, 14(8), 22–22. doi:10.1167/14.8.22. PMID: 25074900

Buchanan, J. W., Koltes, J. E., Reecy, J. M., & Mateescu, R. G. (2014). Deriving gene networks underlying fatty acid composition of the triacylglycerol lipid fraction in angus longissimus muscle. In Proceedings of the international plant and animal genome conference. Plant and Animal XXII Conference, San Diego, CA.

Couger, M. B., Pipes, L., Squina, F., Prade, R., Siepel, A., Palermo, R., Katze, M. G., Mason, C. E., & Blood, P. D. (2014). Enabling large-scale next-generation sequence assembly with blacklight. Concurrency and Computation: Practice and Experience, 26(13), 2157–2166. doi:10.1002/cpe.3231. PMID: 25294974

Durica, D. S., Das, S., Najar, F., Roe, B., Phillips, B., Kappalli, S., & Anilkumar, G. (2014). Alternative splicing in the fiddler crab cognate ecdysteroid receptor: Variation in receptor isoform expression and DNA binding properties in response to hormone. General and Comparative Endocrinology, 206, 80–95. doi:10.1016/j.ygcen.2014.05.034. PMID: 25025945

Dutta, M., Bashir, N. S., Palmer, M. W., & Melcher, U. (2014). Genomic characterization of ambrosia asymptomatic virus 1 and evidence of other tymovirales members in the oklahoma tallgrass prairie revealed by sequence analysis. Archives of Virology, 159(7), 1755–1764. doi:10.1007/s00705-014-1985-7. PMID: 24519459

Farag, I. F., Davis, J. P., Youssef, N. H., & Elshahed, M. S. (2014). Global patterns of abundance, diversity and community structure of the aminicenantes (candidate phylum OP8). PLoS ONE, 9(3), e92139. doi:10.1371/journal.pone.0092139. PMID: 24637619

Kang, Z. (2014). Development and applications of infrared structural biology (Doctoral dissertation, Oklahoma State University). HDL: 11244/14927

Keesee, M., Zhang, Y., Cox, S., Mouser, M., Chavez, C., Wall, S., Goode, A., Deaton, J., Maheshwari, S., Emery, B., Merrill, L., McVey, S., Mohr, V., Sardi, L., Neeman, H., Alexander, J., George, B., Gray, Z., & Brunson, D. (2014). Digital oklahoma: Harnessing the speed of light. doi:10.13140/RG.2.1.2293.4881

Khan, M., Fan, G., Heisterkamp, D. R., & Yu, L. (2014). Automatic target recognition in infrared imagery using dense HOG features and relevance grouping of vocabulary. In The IEEE conference on computer vision and pattern recognition (CVPR) workshops.

Lin, P., Chen, X., Moktan, H., Arrese, E. L., Duan, L., Wang, L., Soulages, J. L., & Zhou, D. H. (2014). Membrane attachment and structure models of lipid storage droplet protein 1. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1838(3), 874–881. doi:10.1016/j.bbamem.2013.12.003. PMID: 24333382

Lu, H., Bukkapatnam, S., Harimkar, S., Singh, R., & Bardenhagen, S. (2014). Simulations of failure via three-dimensional cracking in fuel cladding for advanced nuclear fuels. Office of Scientific and Technical Information (OSTI). doi:10.2172/1116513

Ma, J. (2014). The minimum spanning k-core problem with bounded CVaR under probabilistic edge failures. In Proceedings of the 2014 INFORMS annual meeting.

Matyi, S. A., Ramaraj, T., Sundararajan, A., Lindquist, I. E., Devitt, N. P., Schilkey, F. D., Lamichhane-Khadka, R., Hoyt, P. R., Mudge, J., & Gustafson, J. E. (2014). Draft genomes of heterogeneous vancomycin-intermediate staphylococcus aureus strain MM66 and MM66 derivatives with altered vancomycin resistance levels. Genome Announcements, 2(4). doi:10.1128/genomea.00688-14. PMID: 25013145

Melcher, U., Verma, R., & Schneider, W. L. (2014). Metagenomic search strategies for interactions among plants and multiple microbes. Frontiers in Plant Science, 5. doi:10.3389/fpls.2014.00268. HDL: 11244/321371

Miao, Z. (2014). A global optimization approach for the maximum quasi-clique problem. In Proceedings of the 2014 INFORMS annual meeting.

Miao, Z., Balasundaram, B., & Pasiliao, E. L. (2014). An exact algorithm for the maximum probabilistic clique problem. Journal of Combinatorial Optimization, 28(1), 105–120. doi:10.1007/s10878-013-9699-4

Moradi, E. (2014). Finding a maximum k-club using the k-clique formation and lazy cuts. In Proceedings of the 2014 INFORMS annual meeting.

Neeman, H., Gray, Z., Huebsch, E., Louthan, G., Runion, M., Snow, J., Zimmerman, B., Akin, D., Alexander, J., Brunson, D., Calhoun, S. P., Deaton, J., Fotou, F. F., George, B., & Gentis, D. (2014). The OneOklahoma friction free network. In Proceedings of the 2014 annual conference on extreme science and engineering discovery environment - XSEDE ’14. ACM Press. doi:10.1145/2616498.2616542. HDL: 11244/15456

Norouzzadeh, P., Myles, C. W., & Vashaee, D. (2014). Structural, electronic, phonon and thermodynamic properties of hypothetical type-VIII clathrates Ba₈Si₄₆ and Ba₈Al₁₆Si₃₀ investigated by first principles. Journal of Alloys and Compounds, 587, 474–480. doi:10.1016/j.jallcom.2013.10.190

Ramaraj, T., Matyi, S. A., Sundararajan, A., Lindquist, I. E., Devitt, N. P., Schilkey, F. D., Lamichhane-Khadka, R., Hoyt, P. R., Mudge, J., & Gustafson, J. E. (2014). Draft genome sequences of vancomycin-susceptible staphylococcus aureus related to heterogeneous vancomycin-intermediate s. aureus. Genome Announcements, 2(5). doi:10.1128/genomea.01033-14. PMID: 25301662

Razzaghi Soufiani, A. (2014). Computational studies of molybdenum oxide clusters and environmental corrosion of iron and zinc (Doctoral dissertation, Oklahoma State University). HDL: 11244/15083

Sahu, S. S., Weirick, T., & Kaundal, R. (2014). Predicting genome-scale arabidopsis-pseudomonas syringae interactome using domain and interolog-based approaches. BMC Bioinformatics, 15(Suppl 11), S13. doi:10.1186/1471-2105-15-s11-s13. HDL: 11244/302068

Stobbe, A. H., Schneider, W. L., Hoyt, P. R., & Melcher, U. (2014). Screening metagenomic data for viruses using the e-probe diagnostic nucleic acid assay. Phytopathology, 104(10), 1125–1129. doi:10.1094/phyto-11-13-0310-r. PMID: 25207481

Struchtemeyer, C. G., Ranganathan, A., Couger, M. B., Liggenstoffer, A. S., Youssef, N. H., & Elshahed, M. S. (2014). Survival of the anaerobic fungus orpinomyces sp. strain C1A after prolonged air exposure. Scientific Reports, 4(1). doi:10.1038/srep06892. PMID: 25367149

Ternes, C. M. & Schönknecht, G. (2014). Gene transfers shaped the evolution of de novo NAD⁺ biosynthesis in eukaryotes. Genome Biology and Evolution, 6(9), 2335–2349. doi:10.1093/gbe/evu185. HDL: 11244/321439

Weirick, T., Sahu, S. S., Mahalingam, R., & Kaundal, R. (2014). LacSubPred: Predicting subtypes of laccases, an important lignin metabolism-related enzyme class, using in silico approaches. BMC Bioinformatics, 15(Suppl 11), S15. doi:10.1186/1471-2105-15-s11-s15. HDL: 11244/302081

2013

Borja, G. (2013). Evolutionary history of paysonia (brassicaceae) (Master’s thesis, Oklahoma State University). HDL: 11244/11144

Coyner, B. S., Braun, J. K., Mares, M. A., & Van Den Bussche, R. A. (2013). Taxonomic validity of species groups in the genus Akodon (rodentia, cricetidae). Zoologica Scripta, 42(4), 335–350. doi:10.1111/zsc.12014

Dai, S. (2013). First principle computational studies on hydrogen bond switch in biological proton transfer (Master’s thesis, Oklahoma State University). HDL: 11244/11150

Das, S. & Durica, D. S. (2013). Ecdysteroid receptor signaling disruption obstructs blastemal cell proliferation during limb regeneration in the fiddler crab, uca pugilator. Molecular and Cellular Endocrinology, 365(2), 249–259. doi:10.1016/j.mce.2012.10.026. PMID: 23142248

Davis, M. (2013). Molecular coordination of iron homeostasis by microrna (Doctoral dissertation, Oklahoma State University). HDL: 11244/45117

Davis, M. & Clarke, S. (2013). Influence of microRNA on the maintenance of human iron metabolism. Nutrients, 5(7), 2611–2628. doi:10.3390/nu5072611. PMID: 23846788

Ding, T., Palmer, M. W., & Melcher, U. (2013). Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria. BMC Microbiology, 13(1), 1. doi:10.1186/1471-2180-13-1. HDL: 11244/321217

Espindola, A. S. (2013). Massively parallel sequencing (mps) as a diagnostic and forensic analysis tool for important fungi and chromista plant pathogens (Master’s thesis, Oklahoma State University). HDL: 11244/11155

Gao, Y.-D., Harris, A., Zhou, S.-D., & He, X.-J. (2013). Evolutionary events in lilium (including nomocharis, liliaceae) are temporally correlated with orogenies of the q–t plateau and the hengduan mountains. Molecular Phylogenetics and Evolution, 68(3), 443–460. doi:10.1016/j.ympev.2013.04.026. PMID: 23665039

Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., MacManes, M. D., Ott, M., Orvis, J., Pochet, N., Strozzi, F., Weeks, N., Westerman, R., William, T., Dewey, C. N., Henschel, R., LeDuc, R. D., Friedman, N., & Regev, A. (2013). De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis. Nature Protocols, 8(8), 1494–1512. doi:10.1038/nprot.2013.084. PMID: 23845962

Kaundal, R., Sahu, S. S., Verma, R., & Weirick, T. (2013). Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. BMC Bioinformatics, 14(S14). doi:10.1186/1471-2105-14-s14-s7. HDL: 11244/302052

Ma, J. & Balasundaram, B. (2013). Solving chance-constrained spanning k-core problem via decomposition and integer programming. IIE Annual Conference. Proceedings, 2774–2783. Retrieved from http://search.proquest.com/docview/1471961684/

Matyi, S. A., Hoyt, P. R., Hosoyama, A., Yamazoe, A., Fujita, N., & Gustafson, J. E. (2013). Draft genome sequences of elizabethkingia meningoseptica. Genome Announcements, 1(4). doi:10.1128/genomea.00444-13. PMID: 23846266

Matyi, S., Dupre, J., Johnson, W., Hoyt, P., White, D., Brody, T., Odenwald, W., & Gustafson, J. (2013). Isolation and characterization of staphylococcus aureus strains from a paso del norte dairy. Journal of Dairy Science, 96(6), 3535–3542. doi:10.3168/jds.2013-6590. PMID: 23608491

Mauro-Herrera, M., Wang, X., Barbier, H., Brutnell, T. P., Devos, K. M., & Doust, A. N. (2013). Genetic control and comparative genomic analysis of flowering time in setaria (poaceae). G3: GENES, GENOMES, GENETICS, 3(2), 283–295. doi:10.1534/g3.112.005207. PMID: 23390604

Neeman, H., Gray, Z., Brunson, D., Huebsch, E., Horton, D., Deaton, J., & Gentis, D. (2013). The oklahoma cyberinfrastructure initiative. In Proceedings of the conference on extreme science and engineering discovery environment: Gateway to discovery (70:1–70:6). XSEDE ’13. San Diego, California, USA: ACM. doi:10.1145/2484762.2484793. HDL: 11244/15455

Nguyen, M. T. (2013). Minimizing energy consumption in random walk routing for wireless sensor networks utilizing compressed sensing. In 2013 8th international conference on system of systems engineering. IEEE. doi:10.1109/sysose.2013.6575283

Nguyen, M. T. & Rahnavard, N. (2013). Cluster-based energy-efficient data collection in wireless sensor networks utilizing compressive sensing. In MILCOM 2013 - 2013 IEEE military communications conference. IEEE. doi:10.1109/milcom.2013.289

Nicholson, J. E. (2013). Methods of association for genome data with rare variants and a multinomial response (Doctoral dissertation, Oklahoma State University). HDL: 11244/10978

Nof, S. Y., Cheng, G. J., Weiner, A. M., Chen, X. W., Bechar, A., Jones, M. G., Reed, C. B., Donmez, A., Weldon, T. D., Bermel, P., Bukkapatnam, S. T. S., Cheng, C., Kumara, S. R. T., Bement, A., Koubek, R., Bidanda, B., Shin, Y. C., Capponi, A., Lee, S., Lehto, M. R., Liu, A. L., Nohadani, O., Dantus, M., Lorraine, P. W., Nolte, D. D., Proctor, R. W., Sardesai, H. P., Shi, L., Wachs, J. P., & Zhang, X.-C. (2013). Laser and photonic systems integration: Emerging innovations and framework for research and education. Human Factors and Ergonomics in Manufacturing & Service Industries, 23(6), 483–516. doi:10.1002/hfm.20555

Norouzzadeh, P., Myles, C. W., & Vashaee, D. (2013). Electronic, elastic, vibrational, and thermodynamic properties of type-VIII clathrates Ba₈Ga₁₆Sn₃₀ and Ba₈Al₁₆Sn₃₀ by first principles. Journal of Applied Physics, 114(16), 163509. doi:10.1063/1.4826213

Pham, P. & Guo, Y. (2013). A semiclassical study of cis-trans isomerization in HONO using an interpolating moving least-squares potential. The Journal of Chemical Physics, 138(14), 144304. doi:10.1063/1.4799270. PMID: 24981532

Schonknecht, G., Chen, W.-H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Brautigam, A., Baker, B. J., Banfield, J. F., Garavito, R. M., Carr, K., Wilkerson, C., Rensing, S. A., Gagneul, D., Dickenson, N. E., Oesterhelt, C., Lercher, M. J., & Weber, A. P. M. (2013). Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science, 339(6124), 1207–1210. doi:10.1126/science.1231707. PMID: 23471408

Schrick, E. K., Forget, T. J., Roewe, K. D., Schrick, A. C., Moore, C. E., Golen, J. A., Rheingold, A. L., Materer, N. F., & Weinert, C. S. (2013). Substituent effects in digermanes: Electrochemical, theoretical, and structural investigations. Organometallics, 32(7), 2245–2256. doi:10.1021/om400132z

Schumacher, L. L., Love, B. C., Ferrell, M., DeSilva, U., Fernando, R., & Ritchey, J. W. (2013). Canine intestinal histoplasmosis containing hyphal forms. Journal of Veterinary Diagnostic Investigation, 25(2), 304–307. doi:10.1177/1040638713479604. PMID: 23512926

Stobbe, A. (2013). Virus detection in a metagenomic sequence dataset: Methods and applications (Doctoral dissertation, Oklahoma State University). HDL: 11244/11047

Stobbe, A. H., Daniels, J., Espindola, A. S., Verma, R., Melcher, U., Ochoa-Corona, F., Garzon, C., Fletcher, J., & Schneider, W. (2013). E-probe diagnostic nucleic acid analysis (EDNA): A theoretical approach for handling of next generation sequencing data for diagnostics. Journal of Microbiological Methods, 94(3), 356–366. doi:10.1016/j.mimet.2013.07.002. PMID: 23867249

Stowe, M. & Kak, S. (2013). Neural network capacity for multilevel inputs. arXiv. doi:10.48550/ARXIV.1307.8104

Stowe, M. D. (2013). Neural network capacity with delta learning and linear thresholds (Master’s thesis, Oklahoma State University). HDL: 11244/11190

Wang, S. & Rahnavard, N. (2013). Binary compressive sensing via sum of l1-norm and l(infinity)-norm regularization. In MILCOM 2013 - 2013 IEEE military communications conference. IEEE. doi:10.1109/milcom.2013.274

Wasala, L., Talley, J. L., DeSilva, U., Fletcher, J., & Wayadande, A. (2013). Transfer of escherichia coli O157:H7 to spinach by house flies, musca domestica (diptera: Muscidae). Phytopathology, 103(4), 373–380. doi:10.1094/phyto-09-12-0217-fi. PMID: 23425236

Youssef, N. H., Couger, M. B., Struchtemeyer, C. G., Liggenstoffer, A. S., Prade, R. A., Najar, F. Z., Atiyeh, H. K., Wilkins, M. R., & Elshahed, M. S. (2013). The genome of the anaerobic fungus orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader. Applied and Environmental Microbiology, 79(15), 4620–4634. doi:10.1128/aem.00821-13. HDL: 11244/301776

2012

Allred, B. W. (2012). Fire-grazing interaction: An ecological process (Doctoral dissertation, Oklahoma State University). HDL: 11244/6841

Cheng, C., Bukkapatnam, S. T., Raff, L. M., Hagan, M., & Komanduri, R. (2012). Monte carlo simulation of carbon nanotube nucleation and growth using nonlinear dynamic predictions. Chemical Physics Letters, 530, 81–85. doi:10.1016/j.cplett.2012.01.067

Cheng, C., Bukkapatnam, S. T., Raff, L. M., & Komanduri, R. (2012). Towards control of carbon nanotube synthesis process using prediction-based fast monte carlo simulations. Journal of Manufacturing Systems, 31(4), 438–443. doi:10.1016/j.jmsy.2012.06.006

Cheng, C., Bukkapatnam, S., Raff, L., & Komanduri, R. (2012). Novel nanoinformatics methods for scaling up atomistic-scale simulation of carbon nanotube synthesis. IIE Annual Conference. Proceedings, 1–9. Retrieved from http://search.proquest.com/docview/1151086928/

Davis, M. R., Rendina, E., Peterson, S. K., Lucas, E. A., Smith, B. J., & Clarke, S. L. (2012). Enhanced expression of lipogenic genes may contribute to hyperglycemia and alterations in plasma lipids in response to dietary iron deficiency. Genes & Nutrition, 7(3), 415–425. doi:10.1007/s12263-011-0278-y. PMID: 22228222

Ding, T. (2012). The analysis of the diversity and distribution of leaf endophytic bacterial communities (Doctoral dissertation, Oklahoma State University). HDL: 11244/6837

Espindola, A., Garzon, C., Fletcher, J., & Schneider, W. (2012). Validation of EDNA, a newly developed bioinformatics tool, for the detection of pythium ultimum from metagenomic samples. In Abstracts submitted for presentation at the 2012 APS annual meeting (7S, S4.1–S4.145). Scientific Societies. doi:10.1094/phyto-102-7-s4.1

Fernando, B. R., Hermansky, S., Kim, H., Bible, M. R., Carter, S. D., & DeSilva, U. (2012). Impact of diet on swine fecal microbiome. In Proceedings of the international conference on the status of plant and animal genome research. Plant and Animal XX Conference, San Diego, CA.

Francisco, C. A., Mermin, J., & Schweig, J. (2012). Generalizing the borel property. Journal of the London Mathematical Society, 87(3), 724–740. doi:10.1112/jlms/jds071

Handa, S. & Slaughter, L. M. (2012). Enantioselective alkynylbenzaldehyde cyclizations catalyzed by chiral gold(i) acyclic diaminocarbene complexes containing weak Au-arene interactions. Angewandte Chemie, 124(12), 2966–2969. doi:10.1002/ange.201107789

Mahdavi Pajouh, F. (2012). Polyhedral combinatorics, complexity and algorithms for k-clubs in graphs (Doctoral dissertation, Oklahoma State University). HDL: 11244/7774

Pajouh, F. M., Miao, Z., & Balasundaram, B. (2012). A branch-and-bound approach for maximum quasi-cliques. Annals of Operations Research, 216(1), 145–161. doi:10.1007/s10479-012-1242-y

Ray, A., Saykhedkar, S., Ayoubi-Canaan, P., Hartson, S. D., Prade, R., & Mort, A. J. (2012). Phanerochaete chrysosporium produces a diverse array of extracellular enzymes when grown on sorghum. Applied Microbiology and Biotechnology, 93(5), 2075–2089. doi:10.1007/s00253-012-3907-5. PMID: 22290653

Sattar, S., Addo-Quaye, C., Song, Y., Anstead, J. A., Sunkar, R., & Thompson, G. A. (2012). Expression of small RNA in aphis gossypii and its potential role in the resistance interaction with melon. PLoS ONE, 7(11), e48579. doi:10.1371/journal.pone.0048579. PMID: 23173035

Sattar, S., Song, Y., Anstead, J. A., Sunkar, R., & Thompson, G. A. (2012). Cucumis melo MicroRNA expression profile during aphid herbivory in a resistant and susceptible interaction. Molecular Plant-Microbe Interactions, 25(6), 839–848. doi:10.1094/mpmi-09-11-0252. PMID: 22375710

Saykhedkar, S., Ray, A., Ayoubi-Canaan, P., Hartson, S. D., Prade, R., & Mort, A. J. (2012). A time course analysis of the extracellular proteome of aspergillus nidulans growing on sorghum stover. Biotechnology for Biofuels, 5(1), 52. doi:10.1186/1754-6834-5-52. HDL: 11244/302069

Schneider, W. L., Stobbe, A. H., Daniels, J., Espindola, A. S., Verma, R., Blagden, T., Fletcher, J., Ochoa-Corona, F., Garzon, C., & Hoyt, P. R. (2012). Next-generation diagnostics: Eliminating the excessive sequence processing associated with next-generation sequencing using EDNA. In Abstracts of special session presentations at the 2012 APS annual meeting (Vol. 102, 7S, S4.146–S4.167). Scientific Societies. doi:10.1094/phyto-102-7-s4.146

Stobbe, A., Melcher, U. K., Fletcher, J., & Schneider, W. L. (2012). Validation of a unique sequence-based detection of plant pathogens using next-generation sequence data. In Abstracts submitted for presentation at the 2012 APS annual meeting (Vol. 102, 7S, S4.1–S4.145). Scientific Societies. doi:10.1094/phyto-102-7-s4.1

Stobbe, A., Melcher, U. K., & Schneider, W. L. (2012). Designing and validation of e-probes to strain type plum pox virus. In Abstracts submitted for presentation at the 2012 APS annual meeting (Vol. 102, 7S, S4.1–S4.145). Scientific Societies. doi:10.1094/phyto-102-7-s4.1

Verma, R. & Melcher, U. (2012). A support vector machine based method to distinguish proteobacterial proteins from eukaryotic plant proteins. BMC Bioinformatics, 13(S15). doi:10.1186/1471-2105-13-s15-s9. HDL: 11244/302078

Yerramsetty, K. M., Neely, B. J., & Gasem, K. A. (2012). A non-linear structure–property model for octanol–water partition coefficient. Fluid Phase Equilibria, 332, 85–93. doi:10.1016/j.fluid.2012.07.001. PMID: 23185102

Zhu, L., Chen, S., Jiang, Z., Zhang, Z., Ku, H.-C., Li, X., McCann, M., Harris, S., Lust, G., Jones, P., & Todhunter, R. (2012). Identification of quantitative trait loci for canine hip dysplasia by two sequential multipoint linkage analyses. Journal of Applied Statistics, 39(8), 1719–1731. doi:10.1080/02664763.2012.673121

2011

Allred, B. W., Fuhlendorf, S. D., Engle, D. M., & Elmore, R. D. (2011). Ungulate preference for burned patches reveals strength of fire-grazing interaction. Ecology and Evolution, 1(2), 132–144. doi:10.1002/ece3.12. HDL: 11244/321254

Allred, B. W., Fuhlendorf, S. D., & Hamilton, R. G. (2011). The role of herbivores in great plains conservation: Comparative ecology of bison and cattle. Ecosphere, 2(3), art26. doi:10.1890/es10-00152.1

Constantin, P., Lai, M.-C., Sharma, R., Tseng, Y.-H., & Wu, J. (2011). New numerical results for the surface quasi-geostrophic equation. Journal of Scientific Computing, 50(1), 1–28. doi:10.1007/s10915-011-9471-9

Daniels, J., Stobbe, T., Espindola, A., Schneider, W., Fletcher, J., & Ochoa-Corona, F. (2011). In silico simulation of massively parallel sequencing as a diagnostic tool for bacterial phytopathogens. In Phytopathology (Vol. 101, 6, S41–S41). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.

Dasari, T. (2011). Sensing and actuating tasks as services and its quality of services in large clustered environments (Master’s thesis, Oklahoma State University). HDL: 11244/8142

Espindola, A., Stobbe, A., Daniels, J., Fletcher, J., Garzon, C., & Schneider, W. (2011). Design and validation of queries for the detection of phytophthora ramorum in simulated metagenomes. In Phytopathology (Vol. 101, 6, S50–S50). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.

Fernando, B. R. & DeSilva, U. (2011). Phage biome of the bovine rumen. In Proceedings of the 2011 international conference on the status of plant and animal genome research. Plant and Animal XIX Conference, San Diego, CA.

Francisco, C. A., Mermin, J., & Schweig, J. (2011). Borel generators. Journal of Algebra, 332(1), 522–542. doi:10.1016/j.jalgebra.2010.09.042

Friedenberg, S. G., Zhu, L., Zhang, Z., van den Berg Foels, W., Schweitzer, P. A., Wang, W., Fisher, P. J., Dykes, N. L., Corey, E., Vernier-Singer, M., Jung, S.-W., Sheng, X., Hunter, L. S., McDonough, S. P., Lust, G., Bliss, S. P., Krotscheck, U., Gunn, T. M., & Todhunter, R. J. (2011). Evaluation of a fibrillin 2 gene haplotype associated with hip dysplasia and incipient osteoarthritis in dogs. American Journal of Veterinary Research, 72(4), 530–540. doi:10.2460/ajvr.72.4.530. PMID: 21453155

Harris, A. J. & Xiang, Q.-Y. (2011). The Bayes–DIVA method and its application for testing biogeographic origins of inter-continental disjunct endemics. In Proceedings of the 2011 international botanical congress.

Ku, H.-C. & Zhu, L. (2011). Bayesian regression analysis of quantitative trait with correlated phenotypic data. In JSM proceedings. American Statistical Association, Alexandria, VA.

Link-Pérez, M. A., Watson, L. E., & Hickey, R. J. (2011). Redefinition of adiantopsis fée (pteridaceae): Systematics, diversification, and biogeography. TAXON, 60(5), 1255–1268. doi:10.1002/tax.605003

PELSER, P. B., ABBOTT, R. J., COMES, H. P., MILTON, J. J., MÖLLER, M., LOOSELEY, M. E., CRON, G. V., BARCELONA, J. F., KENNEDY, A. H., WATSON, L. E., BARONE, R., HERNÁNDEZ, F., & KADEREIT, J. W. (2011). The genetic ghost of an invasion past: Colonization and extinction revealed by historical hybridization in Senecio. Molecular Ecology, 21(2), 369–387. doi:10.1111/j.1365-294x.2011.05399.x. PMID: 22171696

Stobbe, A. H. [A. H.], Melcher, U., Palmer, M. W., Roossinck, M. J., & Shen, G. (2011). Co-divergence and host-switching in the evolution of tobamoviruses. Journal of General Virology, 93(2), 408–418. doi:10.1099/vir.0.034280-0. PMID: 22049092

Stobbe, A., Daniels, J., Espindola, A., Schneider, W., Fletcher, J., & Melcher, U. (2011). Use of massively parallel sequencing as a diagnostic tool. In Phytopathology (Vol. 101, 6, S171–S172). AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA.

Struchtemeyer, C. G., Davis, J. P., & Elshahed, M. S. (2011). Influence of the drilling mud formulation process on the bacterial communities in thermogenic natural gas wells of the barnett shale. Applied and Environmental Microbiology, 77(14), 4744–4753. doi:10.1128/aem.00233-11. HDL: 11244/301609

Youssef, N. H., Ashlock-Savage, K. N., & Elshahed, M. S. (2011). Phylogenetic diversities and community structure of members of the extremely halophilic archaea (order halobacteriales) in multiple saline sediment habitats. Applied and Environmental Microbiology, 78(5), 1332–1344. doi:10.1128/aem.07420-11. HDL: 11244/301775

Zhu, L., Feng, F., & Bustamante, C. D. (2011). A regression-based approach for estimating recombination rate from population genomic data. In Proceedings of the international conference on bioinformatics & computational biology (biocomp) (p. 1). The Steering Committee of The World Congress in Computer Science, Computer ….

2010

Apon, A., Pummill, J., & Brunson, D. (2010). Community funding models for computational resources. TigerPrints. Retrieved from https://tigerprints.clemson.edu/computing_pubs/15

Bukkapatnam, S. T. S. & Cheng, C. (2010). Forecasting the evolution of nonlinear and nonstationary systems using recurrence-based local gaussian process models. Physical Review E, 82(5). doi:10.1103/physreve.82.056206. PMID: 21230562

Liggenstoffer, A. S., Youssef, N. H., Couger, M. B., & Elshahed, M. S. (2010). Phylogenetic diversity and community structure of anaerobic gut fungi (phylum neocallimastigomycota) in ruminant and non-ruminant herbivores. The ISME Journal, 4(10), 1225–1235. doi:10.1038/ismej.2010.49. PMID: 20410935

Monismith, J., David R. (2010). Uses of the slime mold lifecycle as a model for numerical optimization (Doctoral dissertation, Oklahoma State University). HDL: 11244/6493

Youssef, N. H., Couger, M. B., & Elshahed, M. S. (2010). Fine-scale bacterial beta diversity within a complex ecosystem (zodletone spring, OK, USA): The role of the rare biosphere. PLoS ONE, 5(8), e12414. doi:10.1371/journal.pone.0012414. PMID: 20865128

2009

Fu, B. (2009). Simulation of microstructural evolution of cross-linked templated silica-aerogels under compression (Master’s thesis, Oklahoma State University). HDL: 11244/9930

HARRIS, A. & XIANG, Q.-Y. J. (2009). Estimating ancestral distributions of lineages with uncertain sister groups: A statistical approach to dispersal-vicariance analysis and a case using Aesculus L. (sapindaceae) including fossils. Journal of Systematics and Evolution, 47(5), 349–368. doi:10.1111/j.1759-6831.2009.00044.x

Zhang, W. & Guo, Y. (2009). First-principles study of crystal structures of NO⁺NO₃^- under pressure. Solid State Communications, 149(33-34), 1342–1346. doi:10.1016/j.ssc.2009.05.027

2008

Andreason, S., Schneider, W., Davis, R., & Wayadande, A. (2008). E-probe diagnostic nucleic acid assay (EDNA) detection of spiroplasma kunkelli in gray lawn leafhopper, Exitianus exitiosu, (uhl.), transcriptome sequencing dataset. In Proceedings of the 2008 annual meeting of the entomological society of america.

2007

Morris, T. L. (2007). Permutation test for the structure of a covariance matrix (Doctoral dissertation, Oklahoma State University). HDL: 11244/7023