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OSU's newest supercomputer "Pete" is available for all OSU researchers.

Pete’s computational infrastructure comprises 5,664 processor cores, 17,280 GB RAM, and more than 2 Petabytes of storage.


Pete doors

System summary:

  • 164 compute nodes, each with dual Intel “Skylake” 6130 CPUs and 96 GB RAM

  • 12 large memory nodes, each with dual Intel “Skylake” 6130 CPUs and 768 GB RAM 

  • 1 super memory node with dual Intel “Skylake” 6130 CPUs and 1.5 TB RAM

  • 10 GPU nodes, each containing dual NVIDIA Quadro RTX6000 GPUS for a total of 20 GPUs

  • 100 Gb/s Intel Omni-path low-latency interconnect

  • 360 TB high-speed parallel file system

  • Slurm Workload Manager

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Tutorial

 

Codes Compiled on Pete

All fields of study at OSU, from physcal sciences and engineering, to mathematics and business, utilize Pete to discover innovative solulations for modern world questions. To aid

researchers in the this quest, HPCC staff, with the help of Pete users, have installed an extensive library of codes and software on Pete. A list of all the programs installed and

available to all users can be seen below.

Pete doors

Compilers:

gcc, intel, impi, openmpi, mpich, mvapich

Codes A-L:

abinit, afni, amber, anaconda, ansys, anvio, argtable, bcftools, bedops, bedtools, bismark, blasr, blast+, blobtools, boost, bowtie, bwa, canu, cd-hit, slustal-omega, cml, concoct, cplex, cufflinks, danps, dastool, diamond, discovardenovo, docker, eq-utils, emboss, energyplus, fastqc, fds, fftw, fraggenescan, freesurfer, gatk, gaussian, gdal, gdlib, go, grace, gromacs, gsl, gtdtk, gurobi, hdf5, hisat, hmmer, htslib, humann, hybpiper, idba, ior, iqtree, iseg, jags, jdk, jellyfish, jemalloc, jre, julia, kallisto, kat, king, kraken, libgd, libgdff, libxc

Codes M-Z:

madgraph, mathematica, matlab, maxbin, matebat, metaphlan, metasim, miniconda, minimap, mirdeep, mothur, mpfr, mumax, mummer, netcdf, nwchem, octopus, openfoam, pasa, pb-jelly, pbh5tools, perl, petsc, pplacer, prodigal, prophet, pullseg, python, qlime, qtlcartographer, quantum-espresso, R, raxml, rnammer, rsem, ruby, segemath, salmon, samtools, scalapack, siesta, singularity, snippy, solexaqa, spades, sratoolkit, stacks, star-ccm, star-rna, stringtie, structure, subread, tophat, transdecoder, trimgalore, trimmomatic, trinity, trinotate, vapor, velvet, vsearch, wget, yaml, zlib

 

OSU’s supercomputers and support team enable computational and data intensive research for hundreds of researchers throughout many of Oklahoma’s academic institutions and several national institutions.

The system was funded by MRI Award #1531128, Acquisition of Shared High Performance Compute Cluster for Multidisciplinary Computational and Data-Intensive Research.


 

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