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Oklahoma State University
High Performance Computing Center

A unit in the Division of the Vice President for Research

Genomics study will use HPCC with $720k NSF grant

Oklahoma State University scientist Polly Campbell has been awarded a four-year, $720,000 National Science Foundation grant to study the effects of abnormally expressed imprinted genes on embryonic development and maternal behavior. Campbell is an assistant professor in OSU’s Department of Integrative Biology and the project’s lead investigator.

For Campbell, the NSF grant is her first. The biologist and her collaborators will use advanced genetic tools and behavioral studies in mice to better understand how dysregulation of imprinted genes affects brain development and behavior. Research also suggests these genes may regulate a mother’s instinct to care for her offspring, which can be disrupted if imprinted genes are not expressed normally.

Gene expression means the translation of information stored in DNA that provides instructions to cells. Like most genes, imprinted genes are inherited from both parents, one copy from mom and one from dad. What is unusual about imprinted genes is that only one copy is normally expressed; for some imprinted genes it's the maternal copy, for others it's the paternal copy. In humans, disrupted expression or deletion of imprinted genes is often associated with physical and cognitive abnormalities and is the cause of several genetic disorders, including Angelman syndrome and Prader–Willi syndrome.

Imprinted genes are highly expressed in two places – the placenta, where it influences nutrient supply to the embryo and the production of placental hormones, and in the developing brain.

The research takes advantage of a cross between two closely related species of mice whose hybrid offspring are characterized by abnormal imprinted gene expression. Although the study involves mice subjects, it has potential relevance to human health and imprinting disorders in humans, an area that is still not widely understood.

Campbell has been working with the OSU High Performance Computing Center and its bioinformatics specialist Brian Couger on a previous project that the NSF study will build upon. However, this new area of research is novel. It explores how disruption of imprinting in hybrid placentae may affect circulating hormone levels and behavior in otherwise normal mothers. Campbell plans to continue to use the OSU HPCC resources throughout the new project.

"We send out the genes to be sequenced, but when we get the data back, it is going to be such a large amount that we will need to run it through Cowboy [OSU's research supercomputer maintained by the OSU HPCC]," Campbell said. "With the help of Cowboy and the OSU HPCC, we won't be bottlenecked by the data analysis portion of the project."

The research will investigate the occurrences of imprinting at the genome level. Research will include sequencing to measure genomic-wide expression and DNA methylation, or the modification of DNA essential to imprinting. The group will also conduct behavioral studies of pregnant and nursing mothers to better understand how loss of imprinting in the placenta may affect maternal physiology and behavior.

Campbell is collaborating with fellow OSU faculty Jennifer Grindstaff, associate professor and an endocrinologist, and assistant professor Charles Chen, an expert in genomic analysis. The group is also working with Julie Angle in the College of Education, who will work with future and current science teachers to develop high school science curriculum based on Campbell’s research. Teachers will also experience hands-on research in Campbell’s lab. A key part of NSF-funded grants is translating research to enhance scientific literacy.

 

Much of the material for this story was originally reported by OSU Communications